Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04504 ATGAAGAAAGGAAATTTGGGTCTTGGTCTCAAACTCTCTCTTCCTCAAACTGATCAAGTTGCTTTTGCAAAGTTTCTGACTGAAAGTGGAACTTTTAAGGATGGAGATCTGCTTGTTAACAGAGATGGAGTTCGAATTGTCTCTCAGACTGAAGTTGAAGCtCCACCTCCAAATCCAATCAAGCCAACGGACAACCAGTTAAGTTTGGCAGACATAGACATAGTCAAAGTTGTTGGGAAGGGAAATGGAGGGATGGTGCAATTGGTGCAGCACAAATGGACTAATCAGTTTTTTGCATTAAAGATAATTCAAATGAATATCGAAGAGTCTATGCGCAAGCAGATAGCTAAAGAGCTGAAAATTAATCAAGCAGCACAATGTCCTTATGTTGTTGTCTGCTACCAATCATTCTATGATAATGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCATGGCTGATCTTCTGAACAAAGTTAAAACAATTCCGGAGCCTTATCTTTCTGCCATCTGTAAGCAGGTTCTGAAGGGTTTAATGTATCTTCACCATGAAAGACATATTATCCACAGAGACTTGAAACCTTCTAATTTGTTGATTAATCACATTGGCGAAGTTAAGATTACTGATTTTGGTGTTAGTGCAATTATGGAAAATACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAACGTGGTTACAACTACAAAAGTGATATATGGAGTTTGGGACTAATATTGCTCGAGTGTGCTTTGGGGCGGTTTCCATATACACCACCAGATCAAAGTGAAAGATGGGAAAGTATATTTGAGCTTATTGAAACTATTGTCGACAAACCTCCTCCTACTCCTCCATCTGACCAATTTTCTGCAGAATTTTGCTCATTTATCTCTGCATGTCTACAGAAAGACCCGGCAAACAGACTGTCGGCTCAGGAACTTATGGAACTACCTTTCATCAGCATGTATGATGACCAGCATGTGGATCTTTCAGCTTTCTTTTCCAATGCAGGATCTCCACTCGCAACCTTATAA 1077 0.3955 MKKGNLGLGLKLSLPQTDQVAFAKFLTESGTFKDGDLLVNRDGVRIVSQTEVEAPPPNPIKPTDNQLSLADIDIVKVVGKGNGGMVQLVQHKWTNQFFALKIIQMNIEESMRKQIAKELKINQAAQCPYVVVCYQSFYDNGVISIILEYMDGGSMADLLNKVKTIPEPYLSAICKQVLKGLMYLHHERHIIHRDLKPSNLLINHIGEVKITDFGVSAIMENTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPPDQSERWESIFELIETIVDKPPPTPPSDQFSAEFCSFISACLQKDPANRLSAQELMELPFISMYDDQHVDLSAFFSNAGSPLATL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04504 358 PANTHER MAP KINASE KINASE 1 358 - -
Tsu04g04504 358 ProSiteProfiles Protein kinase domain profile. 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04504 358 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 358 - -
Tsu04g04504 358 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Tsu04g04504 358 Pfam Protein kinase domain 75 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04504 358 SUPERFAMILY Protein kinase-like (PK-like) 66 342 IPR011009 -
Tsu04g04504 358 Gene3D Transferase(Phosphotransferase) domain 1 152 354 - -
Tsu04g04504 358 Gene3D Phosphorylase Kinase; domain 1 50 151 - -
Tsu04g04504 358 SMART serkin_6 72 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04504 358 CDD PKc_MAPKK_plant_like 70 338 - -
Tsu04g04504 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04504 Tsu-Chr4 52758880 52763844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04504 1 329 MAP Kinase Kinase Gene Family AT4G29810 67.160 3.68e-169 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Tsu04g04504 Pkinase 4.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04504 K20603 - gmx:100789734 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04504 04 52758880 52763844 Tsu04g04504 04 52758880 52763844 ECH
Tsu04g04504 04 52758880 52763844 Tsu08g02589 08 38881818 38884024 PCT