Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04502 ATGTTCGGTCAAGACACAGTTCAGAACCACACACAGTGTATTACAGAAGCGGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTTTGAATGCTGCAGCTGCCAAGCCTGTCAAAGAAGGCAAACAAAGGCCAGTTGTTGATACTAATGTGGGTTTATCTCAACGTCCACCGTGGTTCTGTAGTCTTTGCAATACCAAAGCTACAAGTAAGCAAGCGCTTCTTCTCCATGCTGAAGGAAAGAAACACGGGGCAAAAGCCCGAGCCTTCCATGCTTCGCAGAAGCCACCAGTCCAGACGGATAAACCTGCCCCTGATGCAAAGGATGCCGTGGACACTGCTTCAAATGGTACAGCGAAAGATGACAAAAATGCAGAGCAGCCAAAATTGCAAGAGTCTTCTGAACAAAACAACTTGAAACCAGGGAGTGAAGTTTcatcagaaaagaaaaagaggaaacTTGAAACATTAGAGGGTGGCCTTATTAAAAAATGCAAGAATGGCACTTCAGTTGATACGGAAAATGGTGAAGTAATTCAGGGCGAGAAGGCaggagagaagaaaataaaatggaagAAGTTTATCAAAGCAGCCTTGAAAACTCATTCTGATggattgaagatgaagaaactGAGAAAAGCTGTCCATAAAGCACTGCAAGAATCTGGTATTGTagtaaatgaaaatgaattgaGCGAGGCGCTTGAGCAGAAGATAAATTCCAGCTCCAAATTTGCTGTTGAAAACAAGTATGTGCGATTAGTGGCCTGA 768 0.3945 MFGQDTVQNHTQCITEAEKYGPKGQGKTLNAAAAKPVKEGKQRPVVDTNVGLSQRPPWFCSLCNTKATSKQALLLHAEGKKHGAKARAFHASQKPPVQTDKPAPDAKDAVDTASNGTAKDDKNAEQPKLQESSEQNNLKPGSEVSSEKKKRKLETLEGGLIKKCKNGTSVDTENGEVIQGEKAGEKKIKWKKFIKAALKTHSDGLKMKKLRKAVHKALQESGIVVNENELSEALEQKINSSSKFAVENKYVRLVA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04502 255 Gene3D Classic Zinc Finger 52 93 - -
Tsu04g04502 255 Pfam Zinc-finger of C2H2 type 58 82 - -
Tsu04g04502 255 Pfam LYAR-type C2HC zinc finger 1 20 IPR014898 -
Tsu04g04502 255 SMART ZnF_U1_5 55 89 IPR003604 GO:0003676|GO:0008270
Tsu04g04502 255 MobiDBLite consensus disorder prediction 18 42 - -
Tsu04g04502 255 SUPERFAMILY beta-beta-alpha zinc fingers 53 89 IPR036236 -
Tsu04g04502 255 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 2 254 IPR039999 GO:0003677
Tsu04g04502 255 MobiDBLite consensus disorder prediction 84 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04502 Tsu-Chr4 52735521 52738049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04502 41 187 C2H2 Transcription Factor Family AT2G19380 40.909 7.93e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04502 K15263 - gmx:100790703 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04502 04 52735521 52738049 Tsu04g04502 04 52735521 52738049 ECH