Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04499 ATGGATATTGTTGGAATCAGTGAGGAGGAGCAGGAAGCTATTTTTAGGGTCGTAGCAGCAGTTTTGCACCTTGGAAATATTGAATTTGCAAAAGGAGAGGAGATTGATTCTTCTGTCCTTAAGGATGAGAAGTCTAGGTTCCATCTTAATACGACTGCTGAGCTTCTCAGGTGTGATGCTAAGAGCTTGGAAGATGCACTGATTCAGCGTGTGATGGTAACACCTGAGGAGGTTATTACAAGAACACTTGATCCTGTTGCAGCTCTCGGTAGCAGGGATGCACTAGCCAAAACTATTTATTCTCGTTTGTTTGACTGGCTAGTGGAGAAGATCAACAATTCAATTGGGCAAGATCCAAATTCAAAATCCATCATTGGAGTTCTTGATATCTATGGGTTTGAAAGTTTTAAGTTTAACAGtTTTGAGCAGTTCTGTATTAATTTTACAAATGAGAAACTGCAGCAACATTTTAATCAGCATGTCTTTAAAATGGAACAAGAAGAATACACCAAAGAAGAAATTGATTGGAGTTACATAGAGTTTGTTGACAACCAAGATGTTTTGGATCTAATCGAGAAGAAACCTGGAGGAATAATTTCACTTCTTGATGAAGCCTGTATGTTTCCTAAGTCTACCCATGAAACATTTGCTCAGAAGTTGTACCAGACATTCAAAAACAACAAGCGCTTTATCAAACCGAAACTTTCTCGAACTAATTTCACGATATCTCATTACGCCGGGGAGGTGACATATCAAGCTGATATGTTTCTGGACAAAAACAAGGATTATGTGGTGGCAGAACATCAGGATCTGTTGATAGCCTCAAAATGCTCCTTTGTGGCAGGTCTATTCCCCCCCTCTCCAGAAGAGtcttcaaaatcttcaaaattCTCTTCAATAGGATCTCGCTTTAAGTCACAACTTCAGTCTTTGATGGAGACCCTAAGTTCAACAGAACCTCACTATATTAGATGCGTGAAGCCAAATAATGTTCTCAAGCCTGCAATTTTTgaaaatgtcaatattattcAACAATTGCGCTGTGGTGGTGTTCTAGAGGCAATTAGAATCAGCTGTGCTGGATATCCTACAAGACGGACCTTTTACGAATTTCTCAACCGATTTGGTGTTCTTGCCCCTGAAGTTCTGGATGGAAGCTACGATGACAAGGTTGCTTGCCAAATGATCCTGGGTAAAATGGGCATGAAAGGCTATCAGATAGGCAAGACAAAGGTTTTCCTAAGAGCAGGCCAAATGGCTGAGTTGGATGCAAGAAGATCTGAGGTCCTTGGAAATGCAGCTAGAATCATCCAGAGGCAAACACGTACCCATATTGCACGAAAGGAATTCATTGAATTGCGTCGAGCTGCAATTAGTTTGCAATCTAATTTGCGAGGAATATTGGCCCGGAAGCTTTATGAGCAGTTGCGACGTGAAGCAGCAGCTCTGAAAATAGAAAAGAACTTCAAAGGATACATTGACAGAAAATCTTACTCAAAAGCACGATCATCTGCAATCATATTGCAGACAGGTTTAAGGTCTATGAAGGCTCGTGATGAATTTAGATTTAGAAAGCAAACAAAGGCTGCAATTAAAATTCAGGCTCATTTTCGTCGGAAAATTGCATATTCATATTATAAAAGATTGCAAAAGGCTGTGGTTGTTACTCAGTGTGGTTGGAGGAGCAGGGTTGCTAGAAAAGAACTTAGAATGCTTAAAATGGCTGCAAGAGATACAGGGGCTCTTAAAGAAGCAAAAGACAAACTTGAAAAGCGTGTTGAAGAACTTACATGGCGTTTGCAAATTGAGAAGCGTTTGAGAACTGATTTGGAAGAGGAAAAGGCACAAGAGGCTGCCAAGTTACATGATGCTTTACATGCAATGCAAATACAAGTTGCAGAAGCAAATGCTAGGGTCATCAAAGAGCGTGAGGCAGCACAGAAAGCCATTGAAGAAGCACCTCCGGTTATTAAAGAGACTCCTGTTATAATTGAAGATACTGAAAAGATTAATTCTTTATTGGCTGAAGTCAATAGTTTGAAGGAATCACTATTTTTAGAAAGAGAGGCTAAAGAAGAGGCCAAAAAAGCTCAGGCTGAGGTTGAAGCTAGAAATAAGGAGCTGGTAAAAAAAGTTGAGGATTCTGACCGCAAAGCGGATCAACTCCAAGAATTGGTTCAGAGATTGGAGGAGAAAATTTCCAATGCAGAGTCAGAAAATCAAGTTCTTCGCCAGCAAGCATTGGTTGCATCACCAACTGCAAAAGCTCTTACTGCAAGACCTAGGACAGTAATTATTCAGAGGACACCAGAAAATGGGAATACTCTAAATGGTGAAGCAAAAACTGGATCAGATATGACTCTTGCACTATCCAATGTACGTGAGCCTGAATCTGAAGGAAAGCCACAGAAATCTCTCAATGATAAACAACAAGAAAACCAGGACTTGCTGATCAAGTGTATATCACAAGATTTGGGATTTTCTGGTGGCAAACCTGTTGCTGCGTGCGTCATATATAAATGCCTTCTACACTGGAGGTCATTTGAAGTTGAAAGAACAACCGTCTTTGACCGTATCATTCAAACAATAGCTTCAGCTGTTGAGGCCCAGGATAATACTGATGTATTAGCCTATTGGTTATCTAATACATCTACTTTATTGATGCTTCTCCAACGCACCCTTAAAGCAAGTGGAGCTGCTAACTTAACACCACAACGCCGAAGAACAGCTTCATCTTCTCTGTTTGGAAGAATGTCTCAAgGGCTAAGGGCATCTCCTCAAAGTGCTGGATTGCCATTTATAAACGGTCGAGGTCTTAGTAGACTTGATGGTTTACGACAAGTAGAAGCAAAATATCCAGCACTTCTGTTTAAGCAACAGCTTACTGCCTTCCTTGAGAAATTATATGGAATGATACGAGACAACCTGAAAAAGGAGATATCCCCATTACTTGGACTGTGTATACAGGCTCCAAGGACCTCTCGTCAAGGTTTAGTAAAAGGGCGCTCCCATGCTAACGCGGTTGCTCAGCAAGCTTTAATAGCTCACTGGCAAAGTATTGTGAAAAGCTTGAACAACTATCTAAAGATAATGAAAGCCAACTATGCGCCTCCTTTCTTGGTTCGTAAAGTGTTCACTCAAATATTCTCATTCATCGATGTTCAATTATTCAACAGTCTTCTTCTGCGTCGTGAGTGTTGTTCATTCAGCAACGGGGAGTATGTGAAGACAGGTTTGGCTGAATTAGAACAGTGGTGCGTCGAGGCGACAGAGGAGTACACTGGCTCAGCTTGGGAGGAGCTGAAACATATCAGGCAGGCAGTTGGATTCCTGGTGATACATCAAAAACCCAAGAAGTCCCTGAATGAAATAACTAAGGAGCTTTGTCCGGGTCTCAGTATACAACAGTTATACAGGATAAGTACAATGTACTGGGATGACAAATATGGCACTCACAGCGTGTCTACAGACGTTACAACAACCATGAGAGCTATGGTTGCCGAGGACTCTTCCAATGCTGTCAGCACTTCTTTCCTATTAGATGATGACTCGAGCATTCCATTTTCGGTGGACGACATCTCCAAATCCATGCAAGAAGTAGAAGTTGCTGATGTGGATCCTCCTCCATTGATACGTGAGAACTCAGGGTTCGGGTTCTTACTAGCTCGCTCGGACTAA 3678 0.4105 MDIVGISEEEQEAIFRVVAAVLHLGNIEFAKGEEIDSSVLKDEKSRFHLNTTAELLRCDAKSLEDALIQRVMVTPEEVITRTLDPVAALGSRDALAKTIYSRLFDWLVEKINNSIGQDPNSKSIIGVLDIYGFESFKFNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIISLLDEACMFPKSTHETFAQKLYQTFKNNKRFIKPKLSRTNFTISHYAGEVTYQADMFLDKNKDYVVAEHQDLLIASKCSFVAGLFPPSPEESSKSSKFSSIGSRFKSQLQSLMETLSSTEPHYIRCVKPNNVLKPAIFENVNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLNRFGVLAPEVLDGSYDDKVACQMILGKMGMKGYQIGKTKVFLRAGQMAELDARRSEVLGNAARIIQRQTRTHIARKEFIELRRAAISLQSNLRGILARKLYEQLRREAAALKIEKNFKGYIDRKSYSKARSSAIILQTGLRSMKARDEFRFRKQTKAAIKIQAHFRRKIAYSYYKRLQKAVVVTQCGWRSRVARKELRMLKMAARDTGALKEAKDKLEKRVEELTWRLQIEKRLRTDLEEEKAQEAAKLHDALHAMQIQVAEANARVIKEREAAQKAIEEAPPVIKETPVIIEDTEKINSLLAEVNSLKESLFLEREAKEEAKKAQAEVEARNKELVKKVEDSDRKADQLQELVQRLEEKISNAESENQVLRQQALVASPTAKALTARPRTVIIQRTPENGNTLNGEAKTGSDMTLALSNVREPESEGKPQKSLNDKQQENQDLLIKCISQDLGFSGGKPVAACVIYKCLLHWRSFEVERTTVFDRIIQTIASAVEAQDNTDVLAYWLSNTSTLLMLLQRTLKASGAANLTPQRRRTASSSLFGRMSQGLRASPQSAGLPFINGRGLSRLDGLRQVEAKYPALLFKQQLTAFLEKLYGMIRDNLKKEISPLLGLCIQAPRTSRQGLVKGRSHANAVAQQALIAHWQSIVKSLNNYLKIMKANYAPPFLVRKVFTQIFSFIDVQLFNSLLLRRECCSFSNGEYVKTGLAELEQWCVEATEEYTGSAWEELKHIRQAVGFLVIHQKPKKSLNEITKELCPGLSIQQLYRISTMYWDDKYGTHSVSTDVTTTMRAMVAEDSSNAVSTSFLLDDDSSIPFSVDDISKSMQEVEVADVDPPPLIRENSGFGFLLARSD 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04499 1225 ProSiteProfiles IQ motif profile. 432 459 IPR000048 GO:0005515
Tsu04g04499 1225 Pfam DIL domain 1044 1147 IPR002710 -
Tsu04g04499 1225 Coils Coil 579 620 - -
Tsu04g04499 1225 Coils Coil 687 746 - -
Tsu04g04499 1225 PRINTS Myosin heavy chain signature 177 205 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu04g04499 1225 PRINTS Myosin heavy chain signature 124 152 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu04g04499 1225 SMART iq_5 477 499 IPR000048 GO:0005515
Tsu04g04499 1225 SMART iq_5 429 451 IPR000048 GO:0005515
Tsu04g04499 1225 SMART iq_5 452 474 IPR000048 GO:0005515
Tsu04g04499 1225 SMART iq_5 548 570 IPR000048 GO:0005515
Tsu04g04499 1225 SMART iq_5 525 547 IPR000048 GO:0005515
Tsu04g04499 1225 SMART iq_5 500 522 IPR000048 GO:0005515
Tsu04g04499 1225 Gene3D Myosin VI head, motor domain, U50 subdomain 7 140 - -
Tsu04g04499 1225 SMART DIL_2 1043 1150 IPR002710 -
Tsu04g04499 1225 Gene3D - 430 480 - -
Tsu04g04499 1225 Gene3D - 528 577 - -
Tsu04g04499 1225 Gene3D - 481 527 - -
Tsu04g04499 1225 ProSiteProfiles IQ motif profile. 453 482 IPR000048 GO:0005515
Tsu04g04499 1225 ProSiteProfiles Myosin motor domain profile. 1 427 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu04g04499 1225 SMART MYSc_2a 1 428 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu04g04499 1225 Pfam Myosin head (motor domain) 1 415 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu04g04499 1225 Gene3D - 362 425 - -
Tsu04g04499 1225 ProSiteProfiles IQ motif profile. 526 553 IPR000048 GO:0005515
Tsu04g04499 1225 Coils Coil 632 652 - -
Tsu04g04499 1225 PANTHER MYOSIN-5 1 1221 - -
Tsu04g04499 1225 ProSiteProfiles IQ motif profile. 478 504 IPR000048 GO:0005515
Tsu04g04499 1225 CDD MyosinXI_CBD 808 1191 IPR037975 GO:0007015
Tsu04g04499 1225 Gene3D - 141 283 - -
Tsu04g04499 1225 PANTHER MYOSIN 1 1221 - -
Tsu04g04499 1225 ProSiteProfiles IQ motif profile. 549 578 IPR000048 GO:0005515
Tsu04g04499 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 480 IPR027417 -
Tsu04g04499 1225 ProSiteProfiles IQ motif profile. 501 530 IPR000048 GO:0005515
Tsu04g04499 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 577 IPR027417 -
Tsu04g04499 1225 ProSiteProfiles Dilute domain profile. 857 1168 IPR002710 -
Tsu04g04499 1225 Pfam IQ calmodulin-binding motif 454 473 IPR000048 GO:0005515
Tsu04g04499 1225 Pfam IQ calmodulin-binding motif 551 570 IPR000048 GO:0005515
Tsu04g04499 1225 Pfam IQ calmodulin-binding motif 527 547 IPR000048 GO:0005515
Tsu04g04499 1225 Pfam IQ calmodulin-binding motif 432 450 IPR000048 GO:0005515
Tsu04g04499 1225 Gene3D Kinesin motor domain 289 361 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04499 Tsu-Chr4 52700749 52711677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04499 1 1225 Myosins gene family AT5G20490 80.327 0.0 2031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04499 K10357 - gmx:100804820 2198.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04499 04 52700749 52711677 Tsu04g04499 04 52700749 52711677 ECH