Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04490 ATGGGGAGAAGCCCTTGTTGTGCAAAGGAAGGTTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATCCTCACTGACTACATTAAGCTCCATGGTGAAGGAAAATGGAGAAACCTTCCAAAAAGAGCAGGTTTAAAAAGATGCGGAAAAAGTTGTAGACTTAGATGGTTGAATTATCTAAGACCGGATATTAAGAGAGGTAATATATCCTCGGATGAAGAAGAACTTATCATCAGACTTCACAAACTACTCGGAAACAGATGGTCTCTAATAGCCGGAAGACTTCCAGGGCGAACAGACAATGAAATAAAGAACTACTGGAACACAAATTTAGGAAAAAAGGTTAAGGATCTCAATCAAAAAAACACCAACAATACTTCTCCTACTAAATCTTCTGCTCAACCAAAAAATGGAAAGATCAAACAGAAACAACAGATCAATCCTAAGCCAATGAAGCCAAACTCAAATGTTGTCCGTACAAAAGCTACAAAGTGTTCTAAGGTATTATTCATAAACTCATCACCAATGCATAGTTTGCAGAACAAAGCTGAGGCAGAGACAAAAACAAAGCCATCAATGATGGTTGATGGTGTAGCTAGTGATTCAATGAGTAATAACGAAATGGAATGTGGTAATGGATTTTTGTCATTTCGCGACAAAGTGAAAGAACTATCAACAGATTTGCTAGATGATTTTAACATCGCGGATGATATTTGCTTATCTGAACTTCTAAACTCCGATTTCTCAAATGCCTGCAATTTCGATTACAATGATCTATTGTCGCCTTGTTCGGATCAAACTCAAATGTTCTCTGATGATGAGATTCTCAAGAATTGGACACAATGTAACTTTGGTGATGAGACAAATGTGTCCAACAACCTTCATTCTTTTGCTTCCTTTCTTGAATCCAGTGAGGAAGTACTAGGagaatga 936 0.3739 MGRSPCCAKEGLNRGAWTAHEDKILTDYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLNQKNTNNTSPTKSSAQPKNGKIKQKQQINPKPMKPNSNVVRTKATKCSKVLFINSSPMHSLQNKAEAETKTKPSMMVDGVASDSMSNNEMECGNGFLSFRDKVKELSTDLLDDFNIADDICLSELLNSDFSNACNFDYNDLLSPCSDQTQMFSDDEILKNWTQCNFGDETNVSNNLHSFASFLESSEEVLGE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04490 311 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu04g04490 311 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu04g04490 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu04g04490 311 Gene3D - 70 148 - -
Tsu04g04490 311 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu04g04490 311 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tsu04g04490 311 CDD SANT 16 61 IPR001005 -
Tsu04g04490 311 MobiDBLite consensus disorder prediction 115 158 - -
Tsu04g04490 311 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 270 - -
Tsu04g04490 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu04g04490 311 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu04g04490 311 PANTHER TRANSCRIPTION FACTOR TT2 1 270 - -
Tsu04g04490 311 CDD SANT 71 112 IPR001005 -
Tsu04g04490 311 Gene3D - 14 66 - -
Tsu04g04490 311 SMART sant 13 63 IPR001005 -
Tsu04g04490 311 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04490 Tsu-Chr4 52638588 52639758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04490 1 169 MYB Transcription Factor Family AT4G38620 57.059 2.04e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g04490 Myb_DNA-binding 7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04490 K09422 - gmx:100802704 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04490 04 52638588 52639758 Tsu04g04490 04 52638588 52639758 ECH