Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04488 ATGAATGGCAGAAACAGGCATCCTTTTACTCCAACTCAGTGGCAAGAGCTTGAACATCAAGCACTTATTTACAAATACATGGTTTCTGGTATCTCCATTCCACCTGATCTTCTACTTACTATCAAAAGAAGCTACTTAGACTCTTCAAGGCTCTTACCTCACCACTCTCAACACTTTGGGTGGAACTATTTGCCAATGGGATTAGGAAGAAAAATAGACCCAGAGCCAGGAAGATGTAGAAGAACAGATGGAAAGAAATGGAGGTGTTCAAAAGAAGCATATCCAGATTCAAAGTACTGTGAGAGACACATGCATAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTttgaaaacaacaacaacaaacacagATTCTGCAGCTGCTACTTCATCAATCTTATCAATGACTAAAAATAGTAGTTTTGATCctgataataataatactgcAGCACTAAACCCAACAACTCATGACAGTACTTACCATTACCCTCAACACTCTTCTTATACTTCTTCCCATCTTAACCACTCTTTCCTCTACCATAACCCTCCATCTTCAAGGCCTAATTTCTCATTTCAAGAGAACAGTAATGCTGCTCCCATGTTTCTTGACAGTACTGGTTCTTCCTCtcacaataacaacaacaacactgaTTGCAgaAACAGGTATGTTTATGGACTGAGAGAGGAGGTAGATGAGCATGCTTTCTTCACCGAACCTTCTGGAACTATGAGAAGTTTATCAGCTTCATCAATGGATGATTCATGGCAACTCACACCACTTACTATAAGTTCATCTTCCTCTTCAAAGCAGAGGAATTGCTCTGGTTTATCCAATGACAATGAGTACTCTTACTTGCAACTTCAAAGCCTAAgtgacaacaacaacaataactcAAAACAACCACAGCAACAAGATCAAAGTTTTTACATCTCAGGTAATGAAGAAACATTCATGAAACAAGAGAAAGAAGAACCTCAAAAGATTTTTCATCGTTTCTTCGATGAATGGCCACCCAAAAGCAGTAGAAATTCATGGCTTGATTTGGATGATAAATCATCCACCACTCAGCTTTCAATTTCCATTCCTACATCATCTCATGATTTCACAACTTTTAGTTCCAGAAACCAACGCGATGGTTAA 1146 0.3613 MNGRNRHPFTPTQWQELEHQALIYKYMVSGISIPPDLLLTIKRSYLDSSRLLPHHSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTTNTDSAAATSSILSMTKNSSFDPDNNNTAALNPTTHDSTYHYPQHSSYTSSHLNHSFLYHNPPSSRPNFSFQENSNAAPMFLDSTGSSSHNNNNNTDCRNRYVYGLREEVDEHAFFTEPSGTMRSLSASSMDDSWQLTPLTISSSSSSKQRNCSGLSNDNEYSYLQLQSLSDNNNNNSKQPQQQDQSFYISGNEETFMKQEKEEPQKIFHRFFDEWPPKSSRNSWLDLDDKSSTTQLSISIPTSSHDFTTFSSRNQRDG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04488 381 Pfam WRC 74 116 IPR014977 -
Tsu04g04488 381 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu04g04488 381 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu04g04488 381 MobiDBLite consensus disorder prediction 138 160 - -
Tsu04g04488 381 PANTHER - 3 357 IPR031137 GO:0005634|GO:0006351|GO:0032502
Tsu04g04488 381 ProSiteProfiles WRC domain profile. 73 117 IPR014977 -
Tsu04g04488 381 PANTHER GROWTH-REGULATING FACTOR 5 3 357 - -
Tsu04g04488 381 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04488 Tsu-Chr4 52622401 52624376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04488 5 116 GRF Transcription Factor Family AT3G13960 71.304 2.75e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tsu04g04488 WRC 8.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04488 - - mtr:MTR_4g125490 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04488 04 52622401 52624376 Tsu04g04488 04 52622401 52624376 ECH
Tsu04g04488 04 52622401 52624376 Tsu08g02259 08 31194370 31197695 PCT