Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04476 ATGACTGTGATGAAATTTACGTGGAAATCGATATTTCCAAGTTGTTATAAGGGTGAAGGTGATTACTCTTCACCCAAACCAGTAGCAGCAACGAAAGTTGTTGCTACAACAAAAGATGATGTTGCTACAAAGACAAATTCATTTAACAGAATTTCTCTCACGGATCTGAGTTTTCCAAGTGCTACAACACTTTCAGAAGATCTTTCAATATCTTTAGCTGGTTCTAATCTATATGTTTTTACACAAGCTGAGCTTAAGATAATTACTCAGAGCTTTTCTTCTAGTAATTTTCTTGGTGAAGGTGGTTTTGGACCTGTTCATAAAGGGTTCATTGATGATAAGGTTAGAGCTGGACTTGAACCTCAACCTGTGGCTGTTAAGCTTCTAGATTTGGGTGGTTCTCAAGGTCACAAAGAATGGctgACTGAAGTTGTGTTTCTTGGTCAACTGAGACATCAACACCTTGTGAAGCTGATTGGATATTGTTGTGAAGAGGAACATAGGCTTTTGGTTTATGAGTATTTACCAAGAGGAAGCTTAGAACATCAACTATTTAGAAGATATTCAGCAACATTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTCTAGCCTTTTTACATGATGCAAAGAAACCAGTTATCTATAGAGATTTCAAAGCTTCAAACATCTTATTAGATTCTGATTATAATGCAAAACTATCTGATTTTGGCTTGGCAAAAGATGGTCCACAAGGAGATGATACACATGTTTCAACTAGAGTTATGGGCACTCAAGGTTATGCTGCCCCAGAATACATCATGACAGGACATTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTTGTCTTATTGGAACTATTAACCGGTAGAAGATCAGTGGACAAAACACGTCCACCAAGAGAACATAATTTAGTGGAATGGGCCAGACCATTTTTAAATGATGGTCGTAAACTTAGTAGAATAATGGATCCAAGGCTTGAAGGACAGTATTCAGAATCAGGAGCAAGAAAAGCAGCTGCATTAGCTTATCAATGTTTAAGTCATAGACCAAGAAATAGACCTACAATGTCTACAGTAGTTACAACTCTTGAACCTCTTCAAAATTATGTAGACATTCCAATTGGTACTTTTGTTTATACAGCTCCAACAAGTGATGTTAGTAACAATGAAGTTCAAAAAGAGAGTAGTACTAGTAATACTACTCCTTCCGAGACACCAAAGGAGAGATCAAGAAGAGATCATCGTAGAAATCAACATCAAAGTAATGGTGGTGGTACTCATCATAAGCATCTTGTTATAGATAAAAGTAATGCTAATGAAGGGATTAAAGATGGAGAAGAATATTATGATACACctaaggagaagaagagagaaaatggTCACAATCATAGACATCATCATAGACACAATGGACATAGGCATCCACTAAAGTCACCAAAAACAAAGTCACCAAATGAGCTAGGACATCAAAGTGGGTCACACTCAAATTCACCAGATACTTCTATTACATCAGAAAGCCAAGGAGGAAATTAA 1551 0.3617 MTVMKFTWKSIFPSCYKGEGDYSSPKPVAATKVVATTKDDVATKTNSFNRISLTDLSFPSATTLSEDLSISLAGSNLYVFTQAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRAGLEPQPVAVKLLDLGGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEEHRLLVYEYLPRGSLEHQLFRRYSATLPWSTRMKIAVGAAKGLAFLHDAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPQGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKTRPPREHNLVEWARPFLNDGRKLSRIMDPRLEGQYSESGARKAAALAYQCLSHRPRNRPTMSTVVTTLEPLQNYVDIPIGTFVYTAPTSDVSNNEVQKESSTSNTTPSETPKERSRRDHRRNQHQSNGGGTHHKHLVIDKSNANEGIKDGEEYYDTPKEKKRENGHNHRHHHRHNGHRHPLKSPKTKSPNELGHQSGSHSNSPDTSITSESQGGN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04476 516 MobiDBLite consensus disorder prediction 391 410 - -
Tsu04g04476 516 PANTHER OS01G0588500 PROTEIN-RELATED 35 430 - -
Tsu04g04476 516 MobiDBLite consensus disorder prediction 489 516 - -
Tsu04g04476 516 MobiDBLite consensus disorder prediction 391 516 - -
Tsu04g04476 516 MobiDBLite consensus disorder prediction 464 484 - -
Tsu04g04476 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Tsu04g04476 516 Pfam Protein tyrosine and serine/threonine kinase 96 369 IPR001245 GO:0004672|GO:0006468
Tsu04g04476 516 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04476 516 SUPERFAMILY Protein kinase-like (PK-like) 68 370 IPR011009 -
Tsu04g04476 516 MobiDBLite consensus disorder prediction 434 463 - -
Tsu04g04476 516 Gene3D Transferase(Phosphotransferase) domain 1 175 379 - -
Tsu04g04476 516 CDD STKc_IRAK 98 372 - -
Tsu04g04476 516 MobiDBLite consensus disorder prediction 411 426 - -
Tsu04g04476 516 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 35 430 - -
Tsu04g04476 516 Gene3D Phosphorylase Kinase; domain 1 54 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04476 Tsu-Chr4 52529323 52532100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04476 80 393 Glycoside Hydrolase AT3G07070 52.050 3.32e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu04g04476 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04476 - - mtr:MTR_4g125260 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04476 04 52529323 52532100 Tsu04g04476 04 52529323 52532100 ECH
Tsu04g04476 04 52529323 52532100 Tsu08g02291 08 31986480 31989504 PCT