Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g04476 | ATGACTGTGATGAAATTTACGTGGAAATCGATATTTCCAAGTTGTTATAAGGGTGAAGGTGATTACTCTTCACCCAAACCAGTAGCAGCAACGAAAGTTGTTGCTACAACAAAAGATGATGTTGCTACAAAGACAAATTCATTTAACAGAATTTCTCTCACGGATCTGAGTTTTCCAAGTGCTACAACACTTTCAGAAGATCTTTCAATATCTTTAGCTGGTTCTAATCTATATGTTTTTACACAAGCTGAGCTTAAGATAATTACTCAGAGCTTTTCTTCTAGTAATTTTCTTGGTGAAGGTGGTTTTGGACCTGTTCATAAAGGGTTCATTGATGATAAGGTTAGAGCTGGACTTGAACCTCAACCTGTGGCTGTTAAGCTTCTAGATTTGGGTGGTTCTCAAGGTCACAAAGAATGGctgACTGAAGTTGTGTTTCTTGGTCAACTGAGACATCAACACCTTGTGAAGCTGATTGGATATTGTTGTGAAGAGGAACATAGGCTTTTGGTTTATGAGTATTTACCAAGAGGAAGCTTAGAACATCAACTATTTAGAAGATATTCAGCAACATTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTCTAGCCTTTTTACATGATGCAAAGAAACCAGTTATCTATAGAGATTTCAAAGCTTCAAACATCTTATTAGATTCTGATTATAATGCAAAACTATCTGATTTTGGCTTGGCAAAAGATGGTCCACAAGGAGATGATACACATGTTTCAACTAGAGTTATGGGCACTCAAGGTTATGCTGCCCCAGAATACATCATGACAGGACATTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTTGTCTTATTGGAACTATTAACCGGTAGAAGATCAGTGGACAAAACACGTCCACCAAGAGAACATAATTTAGTGGAATGGGCCAGACCATTTTTAAATGATGGTCGTAAACTTAGTAGAATAATGGATCCAAGGCTTGAAGGACAGTATTCAGAATCAGGAGCAAGAAAAGCAGCTGCATTAGCTTATCAATGTTTAAGTCATAGACCAAGAAATAGACCTACAATGTCTACAGTAGTTACAACTCTTGAACCTCTTCAAAATTATGTAGACATTCCAATTGGTACTTTTGTTTATACAGCTCCAACAAGTGATGTTAGTAACAATGAAGTTCAAAAAGAGAGTAGTACTAGTAATACTACTCCTTCCGAGACACCAAAGGAGAGATCAAGAAGAGATCATCGTAGAAATCAACATCAAAGTAATGGTGGTGGTACTCATCATAAGCATCTTGTTATAGATAAAAGTAATGCTAATGAAGGGATTAAAGATGGAGAAGAATATTATGATACACctaaggagaagaagagagaaaatggTCACAATCATAGACATCATCATAGACACAATGGACATAGGCATCCACTAAAGTCACCAAAAACAAAGTCACCAAATGAGCTAGGACATCAAAGTGGGTCACACTCAAATTCACCAGATACTTCTATTACATCAGAAAGCCAAGGAGGAAATTAA | 1551 | 0.3617 | MTVMKFTWKSIFPSCYKGEGDYSSPKPVAATKVVATTKDDVATKTNSFNRISLTDLSFPSATTLSEDLSISLAGSNLYVFTQAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRAGLEPQPVAVKLLDLGGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEEHRLLVYEYLPRGSLEHQLFRRYSATLPWSTRMKIAVGAAKGLAFLHDAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPQGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKTRPPREHNLVEWARPFLNDGRKLSRIMDPRLEGQYSESGARKAAALAYQCLSHRPRNRPTMSTVVTTLEPLQNYVDIPIGTFVYTAPTSDVSNNEVQKESSTSNTTPSETPKERSRRDHRRNQHQSNGGGTHHKHLVIDKSNANEGIKDGEEYYDTPKEKKRENGHNHRHHHRHNGHRHPLKSPKTKSPNELGHQSGSHSNSPDTSITSESQGGN | 516 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g04476 | 516 | MobiDBLite | consensus disorder prediction | 391 | 410 | - | - | |
Tsu04g04476 | 516 | PANTHER | OS01G0588500 PROTEIN-RELATED | 35 | 430 | - | - | |
Tsu04g04476 | 516 | MobiDBLite | consensus disorder prediction | 489 | 516 | - | - | |
Tsu04g04476 | 516 | MobiDBLite | consensus disorder prediction | 391 | 516 | - | - | |
Tsu04g04476 | 516 | MobiDBLite | consensus disorder prediction | 464 | 484 | - | - | |
Tsu04g04476 | 516 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 218 | 230 | IPR008271 | GO:0004672|GO:0006468 | |
Tsu04g04476 | 516 | Pfam | Protein tyrosine and serine/threonine kinase | 96 | 369 | IPR001245 | GO:0004672|GO:0006468 | |
Tsu04g04476 | 516 | ProSiteProfiles | Protein kinase domain profile. | 92 | 376 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Tsu04g04476 | 516 | SUPERFAMILY | Protein kinase-like (PK-like) | 68 | 370 | IPR011009 | - | |
Tsu04g04476 | 516 | MobiDBLite | consensus disorder prediction | 434 | 463 | - | - | |
Tsu04g04476 | 516 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 379 | - | - | |
Tsu04g04476 | 516 | CDD | STKc_IRAK | 98 | 372 | - | - | |
Tsu04g04476 | 516 | MobiDBLite | consensus disorder prediction | 411 | 426 | - | - | |
Tsu04g04476 | 516 | PANTHER | SERINE/THREONINE KINASE FAMILY PROTEIN | 35 | 430 | - | - | |
Tsu04g04476 | 516 | Gene3D | Phosphorylase Kinase; domain 1 | 54 | 174 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g04476 | Tsu-Chr4 | 52529323 | 52532100 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g04476 | 80 | 393 | Glycoside Hydrolase | AT3G07070 | 52.050 | 3.32e-102 | 311 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIIa-2 | Tsu04g04476 | PK_Tyr_Ser-Thr | 1.7e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g04476 | - | - | mtr:MTR_4g125260 | 805.053 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu04g04476 | 04 | 52529323 | 52532100 | Tsu04g04476 | 04 | 52529323 | 52532100 | ECH | |
Tsu04g04476 | 04 | 52529323 | 52532100 | Tsu08g02291 | 08 | 31986480 | 31989504 | PCT |