Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04466 atgtcGACTTCATCGGAGTATTCTGCCAACAACAAATCATCACAGAAATCAACAACGTTCTCTCAAACTTGTAATCTACTGAGCCAATTCATCAAGGAGAAGGGTACTTTCGGAAGCCTCTCCCTTCATAATCCCAATGGATCGCCTGATTCATCTAGTTCTGGAACAACAACAATGGAATTCTTTCCAACAAAAGATCTTCAAACTGTAGATTTTTTATCTACAAGTGGATTTAACTCTTTTGCTGCTAAAGAGCCTAAAACTGCACAATTGACAATGTTTTATAATGGAGAAGTTATTGTGTTGGATGATTTTCCTGCTGAGAAAGTTGAGGAGCTTAAGTCATTTGCCAGAACTCAGATTCAACCTTCCATTATTGGAGAACCAACAATTGCTAGGAGAGCTTCACTTCTTCGATTTCTCGAAAAGAGGAAAGATAGAGTTACTACCAAATCACCATACACTAAACCAAGCAATTAA 480 0.3729 MSTSSEYSANNKSSQKSTTFSQTCNLLSQFIKEKGTFGSLSLHNPNGSPDSSSSGTTTMEFFPTKDLQTVDFLSTSGFNSFAAKEPKTAQLTMFYNGEVIVLDDFPAEKVEELKSFARTQIQPSIIGEPTIARRASLLRFLEKRKDRVTTKSPYTKPSN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04466 159 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 131 155 IPR040390 -
Tsu04g04466 159 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 119 IPR040390 -
Tsu04g04466 159 Pfam Jas motif 131 154 IPR018467 -
Tsu04g04466 159 PANTHER PROTEIN TIFY 10A 131 155 - -
Tsu04g04466 159 PANTHER PROTEIN TIFY 10A 13 119 - -
Tsu04g04466 159 SMART tify_2 84 119 IPR010399 -
Tsu04g04466 159 ProSiteProfiles Tify domain profile. 84 119 IPR010399 -
Tsu04g04466 159 Pfam tify domain 85 113 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04466 Tsu-Chr4 52451616 52453037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04466 5 154 Tify Gene Family AT1G19180 34.703 2.79e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tsu04g04466 tify 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04466 K13464 - gmx:100527510 127.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04466 04 52451616 52453037 Tsu04g04466 04 52451616 52453037 ECH
Tsu04g04466 04 52451616 52453037 Tsu08g02333 08 33256675 33258949 PCT