Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04465 ATGCTTCCACAGAAATTGAGACAGAATCCAATGATGCAGCACTCTCTCTATCACCACCCTGCTCTTATCACTCCTCCACAGataGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTCGGCAACATTCATCCTCAGGTTACAGAACCACTTCTTCAAGAGCTTTTTTCAAGTGCCGGTGCACTTGAAGGATGCAAGCTTATCCGGAAAGAGAAGTCATCTTATGGCTTCGTGGACTACTATGATCGCAGTTCAGCTACGATTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGACAGCATATCAAAGTTAACTGGGCTTATGCTCGTGGCCAAAGAGAAGACACATCAGGACACTTCCATATTTTTGTTGGTGACCTTAGTCCCGAGGTTACAGATGCAACTTTGTATGCTTGCTTCTCAGTGTATTCTAGTTGCTCAGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTATCTTTTCGAAATCAGCAGGAAGCCCAAAGTGCCATAAACGATTTAACTGGTAAATGGCTCGGAAGTAGGCAGATTCGTTGTAACTGGGCTACAAAAGGAGCTAATATCAATGGTGAAAATCAGAGTTCAGATTCCAAAGGTGTTGTGGAGTTAACTAGTGGAACATCTGaaGAAGGGCAGGAAACAACCAGTGATGACGGTCCGGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCCGAGGTTACTTCTGTTGATCTCCATCATCATTTTCATGCCCTTGGTGTTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGGTGAAGCAGCTCTTGCTATACAGATGGGAAATGCTCGGTTTCTGTTTGGCAAACCCATCAAGTGCTCATGGGGTAGCAAGCCAACTCCTCCAGGAACAGCTTCTACCCCTCTTCCACCACCAGTTTCTACGCATGTACCAGTGCCAGGGCTTTCACTTGCCGGTCTTGCAGCGTATGAACGTCAGTTAGCTTTGAGCAAAATGAATGGTGCACATGCCCTTATGCAACAGCAGAATCAGCATGTCCTAAAGCAGGCAGCCATGGGAATGGGTGCTCTTGGGGCTGGGTATGGTGCAGGATTCCCTAATGCTACCGCCCCCCAGCACCTTATgtattatcaataa 1242 0.4581 MLPQKLRQNPMMQHSLYHHPALITPPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEPLLQELFSSAGALEGCKLIRKEKSSYGFVDYYDRSSATIAIVTLNGRNIFGQHIKVNWAYARGQREDTSGHFHIFVGDLSPEVTDATLYACFSVYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANINGENQSSDSKGVVELTSGTSEEGQETTSDDGPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALAIQMGNARFLFGKPIKCSWGSKPTPPGTASTPLPPPVSTHVPVPGLSLAGLAAYERQLALSKMNGAHALMQQQNQHVLKQAAMGMGALGAGYGAGFPNATAPQHLMYYQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04465 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 409 - -
Tsu04g04465 413 SMART rrm1_1 47 116 IPR000504 GO:0003723
Tsu04g04465 413 SMART rrm1_1 253 322 IPR000504 GO:0003723
Tsu04g04465 413 SMART rrm1_1 132 205 IPR000504 GO:0003723
Tsu04g04465 413 Gene3D - 229 330 IPR012677 -
Tsu04g04465 413 Gene3D - 130 226 IPR012677 -
Tsu04g04465 413 Gene3D - 4 129 IPR012677 -
Tsu04g04465 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Tsu04g04465 413 CDD RRM1_TIA1_like 48 118 - -
Tsu04g04465 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 326 IPR000504 GO:0003723
Tsu04g04465 413 SUPERFAMILY RNA-binding domain, RBD 29 127 IPR035979 GO:0003676
Tsu04g04465 413 SUPERFAMILY RNA-binding domain, RBD 127 219 IPR035979 GO:0003676
Tsu04g04465 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Tsu04g04465 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 113 IPR000504 GO:0003723
Tsu04g04465 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 320 IPR000504 GO:0003723
Tsu04g04465 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Tsu04g04465 413 MobiDBLite consensus disorder prediction 211 251 - -
Tsu04g04465 413 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 4 409 - -
Tsu04g04465 413 SUPERFAMILY RNA-binding domain, RBD 245 330 IPR035979 GO:0003676
Tsu04g04465 413 CDD RRM3_TIA1_like 252 326 - -
Tsu04g04465 413 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04465 Tsu-Chr4 52444193 52448889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04465 47 326 Eukaryotic Initiation Factors Gene Family AT2G23350 30.584 1.00e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04465 K13201 - gmx:100813736 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04465 04 52444193 52448889 Tsu04g04465 04 52444193 52448889 ECH