Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04461 ATGAAGGCTCCATCCAATGGTTACATACCTAATTCTGGAGAAGTGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCATGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTCGGTAGCCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCTTCCATGCAAAAGCAGACCGACTTCATACCGAGTTACCCTAACCTTCCTTCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTTCATGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACCCTTCAACCTGTAAACAAATATGACAAGGAAGCAATACTGGCATCAGATTTTGGTCTCAAACAAAACCGTCAACCTACGGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTTCCACGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTTTACAATGCAACCTCCCGCTCAGGAGCTTGTTGCTAAAGATTTACATGACAATACGTGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATTTATTGACTACTGGTTGGAGTGTATTTATCAGCACAAAAAGACTTTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTGCTTTTAGGTTTGAGGCGTGCTAATAGACAGCAGCCAGCGCTTTCTTCATCAGTAATCTCCAGTGACAGTATGCATATTGGCATTTTAGCTGCTGCAGCTCATGCTGCTGCAAATAACAGTCCATTTACTATATATTACAATCCAAGGGCCAGCCCTTCCGAATTTGTTATTCCGTTGGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGAGTCTGGCGTACGTCGATATATGGGTACAGTTACTGGAATTAGTGACTTGGATCCTGTCCGATGGAAAAATTCACAATGGCGCAATCTTCAGATTGGATGGGATGAATCAACAGCTGGTGAACGCCCAAGCAGAGTCTCGATTTGGGACATTGAACCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCTGGAATGCCAGATGACGAGTCTGATGTTGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAGGCTTCCCTGGTTTGAGTTTAGTGCAGTGGATGCAAATGCAGCAGAATAATCAGTTTCCAGCTGCTCAATCAGGATGTTTTCCATCCATGCTCTCATCTAATACTCTGCATGGTAATCTTAGCACCGACGACCCATCCAAATTACTAAGTTTCCAAGCTCCAGGCCTCTCTGCACCAAATCTTCAATTTAACAAACCTAATTTACCAAATCAAACCAACCAATTGCATCAGTCCCCAGCATCATGGCctcagcagcaacaacaacaacagttACAGAACttacagcagcagcagcagcaacaacaacaacaacagttACAGAACTtacaacagcagcagcagcagcagcagcagcaacagttacagcagcagcagcaacagttacagcagcagcagcagcaacaacaacaacagcagcagcagcagctgCAGTCATTGTCGCAAATACCAATGAACCAGTTCCAGCAGCAGAGGCAACAACAGCTGCCTGAATCACAAAACCTGACTCTGCTGCAACAACAAATGTCTCAGCAGCTAGGGCAGCAGCCACAGAAGCAACCACAGTCATCTCAACATGCTTTGAATAATGGTATAGTTGCTTCTAACCAGAATACAAATCAGTTTGCTCAGCAGCAAACACTAGCTTACACTCAGCTTCAGCAAAAACAACAATTGCTCCCGGGAAGTATCCCACTCCAACAAAGTATCCAATCAACCAGTAAGAATACATTCCCACTGACATCCCTACCACAAGACTCGCAATTTCATCAACATATAGACCAGCAAGCAAGTCTCTTACAGAGGCAGCAGCAACAAACACAATTACAACAATCTTCACTGCAGGCGTTACAACAAAGCCAGCCACAGTGGGTGCCACCAAATCTTCCAGTGACTCAAATGTCTCAACAAAACACTTCGGAACAACAACTGCAGTTACAGTTTTTGCACAAattgcagcagcagcagcagcaacaacaacaacaacaacaacttcttTCGACATCTGGCCCACTTTTGCAATCTCAGCTTCTACAGAAACAAAAtactcaacaacaacaacaaaaccagCAATTACCACAGATGCCTATATCCCAACATCATAATCAACAGCTTGGCAATAATGCATTTTCAACGGAGAAGCGTCTCAACAGcaacaatttttcttcttcatctcttaTGCAATCACAGCAGCTTTCTGTGAATCAAACCCCGAATACGCACAAGCCACGCACAATTACTAGAGTTCCCTCTACACTTACAGATGGAGAGGCTCCATCATGCTCAACTTCACCATCTACTAATAACTGCCAGATATCACAACCAAATCTCCTGAAAAGAAATCAACAAGTACAAACTACAATAGGCGGGATTTTGGTAGTGGAGCCTGCCAATAATCTGACACAGGACCTTCAGAGTAAGTCTGACATGCATATCAAACAAGAGTTCTCAAATGTGAAAGGATCGGACCAACTAAAGTATAAAGGGACTACTACTGATCAGCTCGAAGCTTCATCTGGAACATCTTACTGTCTGGATCCTGGTAATGTCCAGCAGAGTTTGCCATTATCCAACTTCTGCATTGAAAGCGATGTCCAATCGAACCCTCGAAACACTCTGCCATTTGAAACTAATTTTGATGGTCTAATGTCTGATACTATGCTTTCTAGGGGTTATGACTCTCAAAAAGATCTTCAAAATTTGTTGGCTAATTATTGTGGTGCTCCAGGAGACATTGAAACCGAGCTGTCCACTGCTGACATCAGCTCACAGTCATTTGGATTACCTGACATGGCTTTTAAGCCTGGTTGCTCAAATGATGTTGGCATTGATGACACTTCTGGGGTTCTGAACAATGGCGTGCGGGCAAACCAAACTCAACGAATGCGAACATATACAAAGGTCCAAAAGCGTGGCTCTGTCGGAAGATGTATTGATGTAACCCGCTACAAGGGATATGATGAACTCCGGTATGATTTGGCACGAATGTTTGGTATTGAAGGGCAACTGGAAGATGCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGagaatgatattcttcttgttGGTGATGACCCTTGGGAGGAATTCGTAAGCTGTGTTCAGAGTATAAAGATATTATCATCAGCTGAGGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCAAATCAAGCATCCAGTGGGACAGATAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCCGCAGCCTCGTTCAATAGGTGA 3501 0.4002 MKAPSNGYIPNSGEVERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDFGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFISTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIYYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQIGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDVENAFKRAMPWLGDDFGMKDASSSGFPGLSLVQWMQMQQNNQFPAAQSGCFPSMLSSNTLHGNLSTDDPSKLLSFQAPGLSAPNLQFNKPNLPNQTNQLHQSPASWPQQQQQQQLQNLQQQQQQQQQQQLQNLQQQQQQQQQQQLQQQQQQLQQQQQQQQQQQQQQLQSLSQIPMNQFQQQRQQQLPESQNLTLLQQQMSQQLGQQPQKQPQSSQHALNNGIVASNQNTNQFAQQQTLAYTQLQQKQQLLPGSIPLQQSIQSTSKNTFPLTSLPQDSQFHQHIDQQASLLQRQQQQTQLQQSSLQALQQSQPQWVPPNLPVTQMSQQNTSEQQLQLQFLHKLQQQQQQQQQQQQLLSTSGPLLQSQLLQKQNTQQQQQNQQLPQMPISQHHNQQLGNNAFSTEKRLNSNNFSSSSLMQSQQLSVNQTPNTHKPRTITRVPSTLTDGEAPSCSTSPSTNNCQISQPNLLKRNQQVQTTIGGILVVEPANNLTQDLQSKSDMHIKQEFSNVKGSDQLKYKGTTTDQLEASSGTSYCLDPGNVQQSLPLSNFCIESDVQSNPRNTLPFETNFDGLMSDTMLSRGYDSQKDLQNLLANYCGAPGDIETELSTADISSQSFGLPDMAFKPGCSNDVGIDDTSGVLNNGVRANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDAQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGGNVPIPNQASSGTDSGNAWRGQYDDNSAASFNR 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04461 1166 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Tsu04g04461 1166 Coils Coil 493 558 - -
Tsu04g04461 1166 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu04g04461 1166 Gene3D - 1033 1127 - -
Tsu04g04461 1166 CDD B3_DNA 125 217 IPR003340 GO:0003677
Tsu04g04461 1166 PANTHER AUXIN RESPONSE FACTOR 19 553 1154 - -
Tsu04g04461 1166 MobiDBLite consensus disorder prediction 1130 1166 - -
Tsu04g04461 1166 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 527 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu04g04461 1166 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 553 1154 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu04g04461 1166 SUPERFAMILY CAD & PB1 domains 1051 1116 - -
Tsu04g04461 1166 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Tsu04g04461 1166 MobiDBLite consensus disorder prediction 789 844 - -
Tsu04g04461 1166 MobiDBLite consensus disorder prediction 1137 1166 - -
Tsu04g04461 1166 MobiDBLite consensus disorder prediction 454 498 - -
Tsu04g04461 1166 Pfam AUX/IAA family 1032 1124 IPR033389 -
Tsu04g04461 1166 Gene3D - 289 360 - -
Tsu04g04461 1166 Gene3D - 124 227 IPR015300 -
Tsu04g04461 1166 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Tsu04g04461 1166 ProSiteProfiles PB1 domain profile. 1038 1131 IPR000270 GO:0005515
Tsu04g04461 1166 SMART B3_2 126 228 IPR003340 GO:0003677
Tsu04g04461 1166 PANTHER AUXIN RESPONSE FACTOR 19 1 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04461 Tsu-Chr4 52418330 52425697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04461 1 483 B3 DNA Binding Superfamily AT1G19220 83.437 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu04g04461 AUX_IAA 8.9e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04461 - K14486 gmx:100816054 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04461 04 52418330 52425697 Tsu04g04461 04 52418330 52425697 ECH
Tsu04g04461 04 52418330 52425697 Tsu08g02361 08 34299644 34306793 PCT