Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04454 ATGGACGATGCCGGAGTCTCCAAATTAACTGCTAAGTTGAAGGAAATATTTCAAAAGTGGCAATTAGGTTCTAAAGAGTGCAATGATGAACAACATTCTGATGTGAATCATGGTGGCATATCACCAATGATTAACAAAAGATTAAACAGTTTAGTATACTGTGATTCTGATGAAGATAGTTGCTGCAATAGTCCTAAGCCACCGCATGATGTTCCTAAAGGGTACTTAGCTGTTTATGTTGGACCAGAACTTAGAAGATTCATCATTCCAACAAGCTACCTTGGTCACTCTCTTTTCAAAATGTTGTTGGAAAAAGCTGCTGATGAATTTGGTTTTGATCAGAGTGGTGGACTTACAATTCCATGTGAAATTGAGACCTTTAAATACCTACTCAGCTGCATGGAGAATACTCAGCTtcatcatgatgatgatgacaccTCTGCTGGAAACAAAGGAACTTTGGAAGAGGGAATAAACTAA 480 0.3625 MDDAGVSKLTAKLKEIFQKWQLGSKECNDEQHSDVNHGGISPMINKRLNSLVYCDSDEDSCCNSPKPPHDVPKGYLAVYVGPELRRFIIPTSYLGHSLFKMLLEKAADEFGFDQSGGLTIPCEIETFKYLLSCMENTQLHHDDDDTSAGNKGTLEEGIN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04454 159 Pfam Auxin responsive protein 56 133 IPR003676 GO:0009733
Tsu04g04454 159 PANTHER SMALL AUXIN-UP RNA-RELATED 5 143 - -
Tsu04g04454 159 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 5 143 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04454 Tsu-Chr4 52345653 52346894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04454 1 156 Calmodulin-binding Proteins AT3G43120 60.366 2.02e-63 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04454 K14488 - gmx:100795275 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04454 04 52345653 52346894 Tsu04g04454 04 52345653 52346894 ECH
Tsu04g04454 04 52345653 52346894 Tsu08g02390 08 35146084 35146838 PCT