Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04453 atggttCATGTTGAAACTGGACCCAAATTATTGGTTACACTAACACTACTGTCTCTCTTCCATCTTATTATCCCAACATTTCCCGACCTGACCTTGTTAGATGAGCATTTAAAAGCGGCGGAGGACGGTGCCATTAGAGTGGTGAGAGTTAGGAAAGACGGAACCGGAGATTTTAAGACGATAACGGATGCCGTGAACAGCATTCCGTCGGGGAACATGAAGAGAGTGGTGGTGTGGATTGGTATGGGGGAATATAGAGAGAAGATAACGGTTGATATGTCAAAACGTTTTGTAACGTTTTATGGGGAAAGGAATGGGAATGAAAATGACATAATGCCCATTATAACGTACGATGCAACTGCTTTACATTATGGGACACTTGATAGTGCAACCGTCGCTGTTGATGCTGATTACTTTGTCGCTGTCAATGTTGCATTTGTGAACTCGTCTCCTATGCCAGATGAAAATAGCGTTGGAGGACAAGCGTTAGCGATGAGGATATCGGGTGACAAGGCTGCATTCTACAATTGCAAGTTCATTGGATTTCAAGATACTTTGTGTGATGATAAAGGCAGACATTTTTTTAAGGATTGCTATATTCAAGGAACCTATGATTTCATATTTGGAAATGGAAAATCCATCTACTTGAGAAGTACCATAAGATCGGTTGCGAAGGGTTTAAATGTTATAACAGCACAAGGTAGGGAAAGTATATCAGAAGATACTGGATTCACTTTTGTGCATTGCAAAATAATCGGAAGCGGTCACAGGAACACTTACCTAGGGCGTGGTTGGAGGAGGAGCCCTAGGGTGGTATTTGCCTATACCTTTATGGACTCTGTCGTCAATTCCAAAGGATGGTACCACCATGAATCCAATGAGACAATCTATTTTGGAGAATATAAGTGCATTGGACCAGGTGCTGCTTCCTCTGCAAGTAggttaaaatttcaaaagatactATCTGATGAAGAAGCTAAACCCTTCTTGAGCATGGCTTATATTCATGGAGAACAGTGGATTCGCCCACCTCCCAAACTGTAA 1044 0.4119 MVHVETGPKLLVTLTLLSLFHLIIPTFPDLTLLDEHLKAAEDGAIRVVRVRKDGTGDFKTITDAVNSIPSGNMKRVVVWIGMGEYREKITVDMSKRFVTFYGERNGNENDIMPIITYDATALHYGTLDSATVAVDADYFVAVNVAFVNSSPMPDENSVGGQALAMRISGDKAAFYNCKFIGFQDTLCDDKGRHFFKDCYIQGTYDFIFGNGKSIYLRSTIRSVAKGLNVITAQGRESISEDTGFTFVHCKIIGSGHRNTYLGRGWRRSPRVVFAYTFMDSVVNSKGWYHHESNETIYFGEYKCIGPGAASSASRLKFQKILSDEEAKPFLSMAYIHGEQWIRPPPKL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04453 347 PANTHER PECTINESTERASE 38 346 - -
Tsu04g04453 347 Gene3D - 44 344 IPR012334 -
Tsu04g04453 347 SUPERFAMILY Pectin lyase-like 47 343 IPR011050 -
Tsu04g04453 347 Pfam Pectinesterase 48 337 IPR000070 GO:0030599|GO:0042545
Tsu04g04453 347 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 38 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04453 Tsu-Chr4 52339512 52341662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04453 33 347 Carbohydrate Esterase AT5G07410 51.572 1.54e-118 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04453 K01051 - gmx:100790786 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04453 04 52339512 52341662 Tsu04g04453 04 52339512 52341662 ECH