Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04450 atGGCACCTGCTATGTGGGAAATCCCAATTTCACAACGAAGTGTAGAATACTTTTTGAAATCATATGAATCATGGGGCGAGGATGTTACAGATGTTTTGAGTTCCAGAGCACGTAGTATAGTTCAGACTATATTTCCTGATAATCCTACTATTCGAAGATTTGATACACTCAGTTTATACTATAAGGTATTGGAAGGTGTGTGCCGAGCCGAGAAGAAGGAGCCCAAAATACTACATGCAATACTAACTTCTGAGATCTTCCATAGATGTTTGCTTGCATCTGCTGCTGCTGTTCAAATAACTGGCACCAGCAGCACTGTGTCAAAGATGTTCCCTGCTGATGTTGTATTGAAGAGCTCTGGAATTACCGCTTTTGATCTTAGCCACACCATCACCGCAAGTTTCATTACACACGAAGACTCTTTCCCAGGATACTTCAGTCGACATCTCAATTCATTCAAAGAACAACTTTTGGAGAGCATGGCATGGAAAAAGGGTTCCTCATTGTACAACTCTTTGTCACTTGCTAGACCTTCCCTTTCAGCCCAAATCAACTGTCGTCAACTGTTTGCTCAATCAATGCCATCATCATTCAATGAAACTATGCTCAACCTGGAGGCAGCAGAAACTAAGATCGGCCTATTTTTCCGTGAGATCAGTATGTTGGGAGCGGTCAGAATATGCGGCATGGTTGAAAGGCTACAATTATCTCAGAGGACAGGGGAGGACGTATACAGTCTTTTCCAGCGAATCCTAAACGAGCGGGCACACCTCTTCTTCAATCGTCATATTGACCAAATCATGTTGTGTTGCTTCTATATGGTCGCACAGTTTTCAAAACTGAACCTGAGTTTCTGGGAGATTCTACACAGCTACAAACAGCAACCAGAGTGCAGATCATCCGTTTTTCGTAGTGTATTTGTTGATTGCCCATTGGCAGGCAATAATGATGATGGGAAACAGATCATACGTTTTTCGTAG 981 0.4251 MAPAMWEIPISQRSVEYFLKSYESWGEDVTDVLSSRARSIVQTIFPDNPTIRRFDTLSLYYKVLEGVCRAEKKEPKILHAILTSEIFHRCLLASAAAVQITGTSSTVSKMFPADVVLKSSGITAFDLSHTITASFITHEDSFPGYFSRHLNSFKEQLLESMAWKKGSSLYNSLSLARPSLSAQINCRQLFAQSMPSSFNETMLNLEAAETKIGLFFREISMLGAVRICGMVERLQLSQRTGEDVYSLFQRILNERAHLFFNRHIDQIMLCCFYMVAQFSKLNLSFWEILHSYKQQPECRSSVFRSVFVDCPLAGNNDDGKQIIRFS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04450 326 PANTHER - 52 197 - -
Tsu04g04450 326 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 208 317 IPR028309 GO:0006357|GO:0051726
Tsu04g04450 326 Gene3D - 164 325 - -
Tsu04g04450 326 SUPERFAMILY Cyclin-like 18 174 IPR036915 -
Tsu04g04450 326 Gene3D - 10 163 - -
Tsu04g04450 326 PANTHER - 208 317 - -
Tsu04g04450 326 SUPERFAMILY Cyclin-like 211 325 IPR036915 -
Tsu04g04450 326 Pfam Retinoblastoma-associated protein B domain 212 310 IPR002719 GO:0005634|GO:0051726
Tsu04g04450 326 SMART RB_A_2 8 173 IPR002720 GO:0005634|GO:0051726
Tsu04g04450 326 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 52 197 IPR028309 GO:0006357|GO:0051726
Tsu04g04450 326 Pfam Retinoblastoma-associated protein A domain 50 173 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04450 Tsu-Chr4 52292031 52293090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04450 208 309 Core Cell Cycle Gene Families AT3G12280 58.824 2.48e-35 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Tsu04g04450 RB_A 2e-26 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04450 K04681 - smo:SELMODRAFT_451523 189.119