Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04449 ATGTTGGGAGCAGTCAGAATAGATGGCATGGCTGAAAAGCTACAACTATCTCACCAGACAGGAGAGAATGTATACTATCTCTTCCAGCGAATCCTAACTCTACGACCCCATATCTTCTCCGATTTTCATATTGAACAAATCATTTTGTGTTGCTTCCGTGCTGTTGCAAAGGACCTAACTTTTCCAGAGATTATAGCCAGCTATAGACTACAACCACAGTACACACCACCAGTTTTTCGTAGTGAATTTGTTGATTGGCCATTGGCATGCCTAGACCCATCATATGGGAAAACAAATGGACTGGCACATATCACTAACATTGTAAAATATTACAATGATATATTTTCTCCCTATGTAAAGCTGTTGCTGTCGGAATTTTACACTGTTGTGACACCTGCGAGGAGTTACAAAATAGCTGAATTCATTAACAAAGCCGACGGCCATCTAGCTCAGTGTCCTGAGCCTCCTATAATATTTACTTTCCCAAGCCTTCCTGTTATGTCTGTGGAAGAAAATTCTGCCGCACACTATGCATGTGTCTCTCCAATAGGATCATCTGAGATCATTATGTTGGGTGCAGTCAGAATCAAGAGCATGGTTGAAATGCTAGGGTTATCTCAGCAGATAAGGGAGAATGTATACCGTTTATTTCAGAGAATCCTACAACAACATACATCTCTCTTCTTCCACCGTCATATTGACCACATCATTTTGTGTTGCTTCTGGGCAGTTGCAAagATTTCAGAACTGAGCCTGACTTTTAAGGAAGTTATAAGCAGCTATGTGAATCAACCACAGTGCAACCCGAGAGTTTTTGATAGTGTATTTGTTGACTGGGCACTGCCATGCCAAGACTCGGCATCTGGTAAAAGAAAAGGACAGGAGCATGTCGACTTTGTTACATTCTGCAATCATATATTCCTTCCCTCTGTAGAGCCACTGCTTTTCGAACTTTTCACTCAAGGGACAAGGGGCTAA 978 0.4162 MLGAVRIDGMAEKLQLSHQTGENVYYLFQRILTLRPHIFSDFHIEQIILCCFRAVAKDLTFPEIIASYRLQPQYTPPVFRSEFVDWPLACLDPSYGKTNGLAHITNIVKYYNDIFSPYVKLLLSEFYTVVTPARSYKIAEFINKADGHLAQCPEPPIIFTFPSLPVMSVEENSAAHYACVSPIGSSEIIMLGAVRIKSMVEMLGLSQQIRENVYRLFQRILQQHTSLFFHRHIDHIILCCFWAVAKISELSLTFKEVISSYVNQPQCNPRVFDSVFVDWALPCQDSASGKRKGQEHVDFVTFCNHIFLPSVEPLLFELFTQGTRG 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04449 325 SUPERFAMILY Cyclin-like 2 133 IPR036915 -
Tsu04g04449 325 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 2 187 IPR028309 GO:0006357|GO:0051726
Tsu04g04449 325 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 188 318 IPR028309 GO:0006357|GO:0051726
Tsu04g04449 325 SUPERFAMILY Cyclin-like 186 321 IPR036915 -
Tsu04g04449 325 Pfam Retinoblastoma-associated protein B domain 188 311 IPR002719 GO:0005634|GO:0051726
Tsu04g04449 325 Pfam Retinoblastoma-associated protein B domain 2 120 IPR002719 GO:0005634|GO:0051726
Tsu04g04449 325 PANTHER BNACNNG22930D PROTEIN 2 187 - -
Tsu04g04449 325 Gene3D - 1 138 - -
Tsu04g04449 325 Gene3D - 169 324 - -
Tsu04g04449 325 PANTHER BNACNNG22930D PROTEIN 188 318 - -
Tsu04g04449 325 CDD CYCLIN 196 258 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04449 Tsu-Chr4 52289490 52291540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04449 186 318 Core Cell Cycle Gene Families AT3G12280 60.150 3.98e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Tsu04g04449 RB_B 4.3e-30 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04449 K04681 - gmx:100777429 176.407