Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04447 ATGGGTCAAACTGTCATCCCTAAAATTTCTCCGTTTCCAACCGCTTTCAAAAGAACCCACGAAATTCACCGGCATTTTCGCGCTTTCATTTCACAGAGAAATTTAGGGATGGTGGGAACACCAGCAGCGGCAACTCCGTTGTCTAAGATTCATAGGAATCTGGCCAGTACTCCCGGCGGTACCAAAATTCGGGAGGAGAATATTAGGGTCACCGTTCGGATGAGGCCGCTGAATAGGAAGGAACAGTCCATGTACGATTTAATTGCTTGGGATTGTTTGGATGAGCAAACCATAGTATTCAAGAATCCAAATGAAGGGAGGCCCGCGACACCATACACCTTCGATAGAGTTTTTGCTCCTGCATGCTCAACTCAGAAGGTTTACGATGAAGGGGCAAAAGATGTTGCATTATCAGCACTTTCTGGAATCAATGCAACCATTTTTGCTTATGGGCAGACGAGCAGTGGCAAGACATTCACGATGAGAGGCATCACTGAAAATGCTATTAGGGACATCTATGATTACATCAAGAATACACCGGATAGGGATTTTGTTTTGAGAATCTCTGCTTTGGAAATCTATAATGAGACTGTTATAGACCTTCTTAATCGTGAATCTGGTCCTCTTCGGCTTTTGGATGATCCAGAGAAAGGGACTATTGTGGAAAAGCTGAATGAAGAAGTAGCCAAGGATGGTCAGCATCTAAGGCATTTAATTGGCATATGTGAAGCTCATAGGCAAGTGGGGGAAACTACTTTAAATGATAAAAGCTCAAGATCACATCAAATAATCAGGCTGACTGTAGAGAGCTTCCTTCGTGAAAGTCAAGACCATGTAAAATCTTACATAGCCAGTTTGAATTTTGTGGATCTTGCTGGAAGTGAGCGCGTATCTCAGACAAATACATGTGGAACAAGATTGAAGGAAGGAAGCCACATTAACAAAAGTCTATTGACACTTGCATCAGTCATCAGGAAGCTAAGTTGTGGAAAACGTGGTCACATACCATATCGAGATTCCAAACTGACACGGATATTGCAATCTTCACTTGGGGGAAATGCTCGAACAGCAATTATATGCACTGTCAGTCCGGCTTTAAGTCATGTGGAGCAAACAAGAAATACACTATCGTTTGCTACCAGTGCAAAGGAAGTTATTAATACTGCCCGTGTAAATATGGTTGTTTCAGAAAAGACACGAGTTAGAGAATTGCAAAAGGAGGTTGCAAGGCTTGAAGGAGAGTTAAGAAACCCTGAACTGTCTGCAGATGAACGTCTAAGGTCTTTGCTAGCTGAAAAGGAGTTAAAAATTAAGCAGATGGAAAAAGATATGGAAGATCTGAAGCGACAGAGAGACCTTGCACAATGTCAACTTGATCTTGAAAGAAGAGCAAATAAAGTTCAGAAGGGATCAATTGATTGCGGGTCTTCTAGTCAAGTTGTCAGATGTCTTTCTTTTGCTGACGAAAATGAATTAGATATTGGTAAACATACTCCAGAGAGAAGGGTAACAGTGAGCAGGCAGGCAATGCTGAAGAATTTATTGGCTTCTCCTGATCCATCAATACTTGTCGATGAAATCCAAAAGCTTGAACATCGGCAGTTACAAGTCTTTGAGGATGCTAACCGAGCACTTGAAGTGCTGCATAAGGATTTTGCAACCCATAATCTGGGAAATCAAGAAACAGCTGATACCATGTCGAAAGTACTGTCTGAAATAAAAGACTTGGTAGCTGCTAGTTCTACAGCGGATGAAATCGTGAAAGCAGACAAGACCAACCTGATGGAAAAGATTACTCAGTTGAAACATCAAGGGAACACTATTTCATCTTTAGAAAGGAAGCTGGAGAATGTTCAGAAATCTATAGACAAGTTGGTATCGGCTTTTGGCACCAAGGAGGCTGCAGACTGTAAGACACAATCTAGAAGGAAGAAAATTCTTGGCTTAAACAACAGCCCCAGTATGCAACACATAATGCGAGCTCCTTGCTCacctctctcttcttcttgtaAAGCAATGGAACATGAAATTGAGAACAGAGTTCCCAACATTTCATCCCCTGGTGGTGATTCTTCTGCAAGGTTGCATAAAGATACCTCACAAAAGGATGATGAAAGTAGCCCTGCTTCGCGGCAATCAAAATCAGTGAATGTGAAGAAGATTCAGAAAATGTTCAAGAATGCTGCCGAGGAGAACATTCGGAGTTTCAGAGTTTATATTACAGAGTTAAAAGAGCTAGTGGCTAAACTGCATTACCAGAAGCAACTTTTGGTTTGCCAGGCAAGATTTGATAGAATttctatttattatattatgGTTTTGGAGCTTGAAGCTAACAAGTCTGTACCTGAAGAAATGGATACGATTGATCGATCTCCTTTATCATGGCGCATACTATTTGAACAGCAGAGAAAGCAAATTATTATGTTATGGCATCTATGCCACATTTCTCTGGTGCACCGAACAcagttttatcttttgttaagaGGAGATACTTCTGATCAGGTATATATGGAAGTTGAACTTAGAAGATTGACATGGTTAGAACAGCATCTGGCAGAGCTTGGGAATGCTAGTCCTGCTCTTCTAGGTGATGAACCTGCAGACTCAGTTTCGGCAAGCATCAGAGCTTTGAAGCAAGAAAGGGAGTATCTTGCCAAGAGGGTGAACTGTAAACTTACAGCAGAGGAGAGGGAACTACTTTATGCAAGATGGGAAGTTCCTCCTGTAGGAAAACAAAGGAGGCTGCAACTTGTAAATAAGTTTTGGACTGACCCTTATAACATGCAACATATACAAGAAAGCGCGGAAATTGTTGCAAAACTCATTGATTTCTGCGTTTCATCACAGACCTATAGTCTTGAATCCAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAGCCTGAGAAAATGagttctcagattgtagctCGCATATTGGTTAAgGCCCTCATGGCTATGCCGGCTCCAGATTTCAGCCTGTGTCTCTTTTTGATTCCGGAACGTGTGCAAATGGAGGAGCAGTTCAAAACACTGATCGTTCTGTCTCACTATTTGGAGACTGGAAGGTTTCGTCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCTGGATTTGAGCAGGCAATCCAAGACTATGCAATCCATGTCCTATCCTTGACTTACCAAAAGATTCCCAGAACTGTGCTTGCTGAGGGTATCAACATCGAAGGTTTAGCCTTGGACAAATTCCTTGAACACCAAGTAGCCAACTCTGGTTGGGTTATTGAGAAAAGCCAGGGCAAGGGTCAACTCATTGTCCTTCCCAGAGATCAATATAATGATCCAACTTTGAAGAAAAACCCTGCAGATAGTGTACCATTCGAGCACATTACTCACATCTTCAATCTTCTTAGTTGA 3414 0.4118 MGQTVIPKISPFPTAFKRTHEIHRHFRAFISQRNLGMVGTPAAATPLSKIHRNLASTPGGTKIREENIRVTVRMRPLNRKEQSMYDLIAWDCLDEQTIVFKNPNEGRPATPYTFDRVFAPACSTQKVYDEGAKDVALSALSGINATIFAYGQTSSGKTFTMRGITENAIRDIYDYIKNTPDRDFVLRISALEIYNETVIDLLNRESGPLRLLDDPEKGTIVEKLNEEVAKDGQHLRHLIGICEAHRQVGETTLNDKSSRSHQIIRLTVESFLRESQDHVKSYIASLNFVDLAGSERVSQTNTCGTRLKEGSHINKSLLTLASVIRKLSCGKRGHIPYRDSKLTRILQSSLGGNARTAIICTVSPALSHVEQTRNTLSFATSAKEVINTARVNMVVSEKTRVRELQKEVARLEGELRNPELSADERLRSLLAEKELKIKQMEKDMEDLKRQRDLAQCQLDLERRANKVQKGSIDCGSSSQVVRCLSFADENELDIGKHTPERRVTVSRQAMLKNLLASPDPSILVDEIQKLEHRQLQVFEDANRALEVLHKDFATHNLGNQETADTMSKVLSEIKDLVAASSTADEIVKADKTNLMEKITQLKHQGNTISSLERKLENVQKSIDKLVSAFGTKEAADCKTQSRRKKILGLNNSPSMQHIMRAPCSPLSSSCKAMEHEIENRVPNISSPGGDSSARLHKDTSQKDDESSPASRQSKSVNVKKIQKMFKNAAEENIRSFRVYITELKELVAKLHYQKQLLVCQARFDRISIYYIMVLELEANKSVPEEMDTIDRSPLSWRILFEQQRKQIIMLWHLCHISLVHRTQFYLLLRGDTSDQVYMEVELRRLTWLEQHLAELGNASPALLGDEPADSVSASIRALKQEREYLAKRVNCKLTAEERELLYARWEVPPVGKQRRLQLVNKFWTDPYNMQHIQESAEIVAKLIDFCVSSQTYSLESNLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQDYAIHVLSLTYQKIPRTVLAEGINIEGLALDKFLEHQVANSGWVIEKSQGKGQLIVLPRDQYNDPTLKKNPADSVPFEHITHIFNLLS 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04447 1137 CDD KISc_CENP_E 67 385 - -
Tsu04g04447 1137 PANTHER CENTROMERE PROTEIN E 59 952 - -
Tsu04g04447 1137 Pfam Domain of unknown function (DUF3490) 800 951 IPR021881 -
Tsu04g04447 1137 SMART kinesin_4 65 393 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu04g04447 1137 Pfam CSN8/PSMD8/EIF3K family 972 1097 IPR033464 -
Tsu04g04447 1137 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 909 1137 IPR009374 GO:0003743|GO:0005737|GO:0005852
Tsu04g04447 1137 ProSiteProfiles Kinesin motor domain profile. 67 385 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu04g04447 1137 PANTHER KINESIN-LIKE PROTEIN KIN-7B 59 952 - -
Tsu04g04447 1137 Coils Coil 394 421 - -
Tsu04g04447 1137 SUPERFAMILY ARM repeat 936 1039 IPR016024 -
Tsu04g04447 1137 SUPERFAMILY "Winged helix" DNA-binding domain 1042 1134 IPR036390 -
Tsu04g04447 1137 Gene3D - 1033 1136 IPR036388 -
Tsu04g04447 1137 Coils Coil 423 464 - -
Tsu04g04447 1137 PRINTS Kinesin heavy chain signature 251 268 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu04g04447 1137 PRINTS Kinesin heavy chain signature 285 303 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu04g04447 1137 PRINTS Kinesin heavy chain signature 335 356 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu04g04447 1137 PRINTS Kinesin heavy chain signature 142 163 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu04g04447 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 419 IPR027417 -
Tsu04g04447 1137 Coils Coil 601 628 - -
Tsu04g04447 1137 Gene3D Kinesin motor domain 60 415 IPR036961 -
Tsu04g04447 1137 MobiDBLite consensus disorder prediction 695 709 - -
Tsu04g04447 1137 Gene3D ARM repeat; domain 1 915 1030 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Tsu04g04447 1137 MobiDBLite consensus disorder prediction 680 717 - -
Tsu04g04447 1137 Pfam Kinesin motor domain 73 385 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Tsu04g04447 1137 ProSitePatterns Kinesin motor domain signature. 284 295 IPR019821 GO:0003777|GO:0005524|GO:0007018
Tsu04g04447 1137 ProSiteProfiles PCI domain profile. 952 1111 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04447 Tsu-Chr4 52242755 52255725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04447 925 1137 Eukaryotic Initiation Factors Gene Family AT4G33250 68.224 2.98e-98 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04447 K11498 - gmx:100791845 1454.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04447 04 52242755 52255725 Tsu04g04447 04 52242755 52255725 ECH