Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04442 ATGGATCTCTTTCATAATACATTGTTGTTAGTGTTCTTCTTTCTACTCTCATCTCACTCAACTTCTGAATTCATTGGTTCATCATGTCTAAGAGTTCCTCCCAACAAATTTGTGGACTCTGCCAAACAAGTCACTACCATTTTACAACAACTACGTTCCAATTTATCACCATTCAACAACACCACCTCTGGAGATGGCATTCAGGATTGCCTCGATTTACTCGACATGTCCTCCGAACAGCTTAGGATGTCTATGTCTGCCGTGCAAAATCCCAAAGGGAAAGATAAACTTGGTACTGGAAATCTGAGCTCTGATCTAAGAACATGGCTGAGTGCTGTTCTTGCTAATTCAGACACATGTATTGAAGGATTAGAAGTGAAGGGCATTGCATCAAAGGAGCTTGATCGTGTAATGTATTTGGTTAAGACACTCTTAGCTCAAGTGATTCCTATCCATGTTGATAAAGTCAACAGGGATCAATTTCCTTCATGGATTAGTGAAGAGGACAAGATGATACTGAGGGGAAATAAAGTGAGGACTCCTGATGCTGTTGTGGCGACCGATGGAAGTGGAGATTACCGTAATGTGACGGACGCGATAAGGGCGGCACCTGATTATAGCATGAGAAGATATGTTATATATGTGAAGCGAGGTGTTTATCGCGATGAATATGTTAGGATCAATTTGACAAAATGGAATATTATGATCATTGGGGATGGCATAGATGCTACTATTATCTCTGGCAGTCGGAATTTTGCCGACAGTTATAAAACGTTCGACACAGCTACCTTTGCTGTTGATGCTGTAGGATTTATAGCATGcaacatttcatttcaaaaCACTGCAGGACCTTTGAAGAAAATGGCAGTGGCATTAAGGTCGGATTCTGATCTCTCTATATTTTATCGGTGTGGGATATCCGGTTATCAAGATAGCCTATATCCCCACTCTATGCGTCAATTCTACAAGGAGTGCAGAATTACTGGTACGGTGGATTTCATCTTCGGAGATGCTACAGCTGTGTTTCAAAACTGCCAAATACTAGCTAGGCAAGGATCGCCCGGACAACAAAATGTGGTTACCGCTCAATCACGGAGATTCATGAACGAATCAACTGGCTTTTCCTTTCAGTTCTGCAACATCTCAGCAGACACTGACCTTAAAGCAACCACCCAGACATACCTTGGTAGACCCTGGCAGGCTTACTCGCGGACAATTTTTATGCAATCCTACATGAGTAACGTGATAAGTCCCGAAGGATGGATACCGTGGAACACTAGTGAATTTTATTTGGACATGTTGACCTATGGCGAGTACCAAAACTTTGGACCAGGTGCTAAGGTAGGAAATCGGGTGAAATGGCCAGGGTACCGTGTACTGAATAAGAGTGAGGCTGAAAAATTCACGGTGGCTGAATTCATCGATGGGGATCTTTGGTTACCCCCCTCTGGTATTAATTACACCGCTGGTTTATCTGTATAA 1482 0.4224 MDLFHNTLLLVFFFLLSSHSTSEFIGSSCLRVPPNKFVDSAKQVTTILQQLRSNLSPFNNTTSGDGIQDCLDLLDMSSEQLRMSMSAVQNPKGKDKLGTGNLSSDLRTWLSAVLANSDTCIEGLEVKGIASKELDRVMYLVKTLLAQVIPIHVDKVNRDQFPSWISEEDKMILRGNKVRTPDAVVATDGSGDYRNVTDAIRAAPDYSMRRYVIYVKRGVYRDEYVRINLTKWNIMIIGDGIDATIISGSRNFADSYKTFDTATFAVDAVGFIACNISFQNTAGPLKKMAVALRSDSDLSIFYRCGISGYQDSLYPHSMRQFYKECRITGTVDFIFGDATAVFQNCQILARQGSPGQQNVVTAQSRRFMNESTGFSFQFCNISADTDLKATTQTYLGRPWQAYSRTIFMQSYMSNVISPEGWIPWNTSEFYLDMLTYGEYQNFGPGAKVGNRVKWPGYRVLNKSEAEKFTVAEFIDGDLWLPPSGINYTAGLSV 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04442 493 Pfam Plant invertase/pectin methylesterase inhibitor 30 128 IPR006501 GO:0004857
Tsu04g04442 493 Gene3D - 177 491 IPR012334 -
Tsu04g04442 493 SUPERFAMILY Pectin lyase-like 181 490 IPR011050 -
Tsu04g04442 493 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 33 491 - -
Tsu04g04442 493 PANTHER PECTINESTERASE 33 491 - -
Tsu04g04442 493 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 145 IPR035513 -
Tsu04g04442 493 CDD PMEI-like_4 17 151 - -
Tsu04g04442 493 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 151 IPR035513 -
Tsu04g04442 493 Pfam Pectinesterase 182 477 IPR000070 GO:0030599|GO:0042545
Tsu04g04442 493 ProSitePatterns Pectinesterase signature 2. 327 336 IPR033131 -
Tsu04g04442 493 SMART PMEI_2 20 151 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04442 Tsu-Chr4 52194308 52196294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04442 8 491 Carbohydrate Esterase AT3G43270 52.039 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04442 K01051 - jre:108993586 570.852