Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04441 ATGGATCTCTTTCATAATACATTGTTGTTAGTGCTCTTCTTTCTACTCTCATCTCACTCAACTTCTGAATTCATTGGTTCATCATGTCTAAGAGTTCCTCCCAACAAATTTGTGGACTCTGCCAAACAAGTCACTACCATTTTACAACAACTACGTTCCAATTTATTACCATTCAACAACACCACCTCTAGAGATGGCATTCAGGATTGCCTCGATTTACTCGACATGTCCTCCGAACAGCTTAGGATGATATCTATGTCTGCCATGCAAAATTCCAAAGGGAAATATAAACTTGGTACTGGAAATCTGAGTTCTGATTTAAGAACATGGCTGAGTGCTGTTCTTGCTAATTCAGACACATGTATTGAAGGATTAGAACAAGGTACAGAAGTGAAGGGCATTGTATCAACAGGTCTTAATCGTGTAATGTATTTGGTGAAGACTCTCTTAGATCAAGTGATTGCTGTCCGTGATGATCAAGTCAATAGAGATCAATTTCCTTCATGGATTACTGAGGAGGACAAGATGATACTGAGGGGAAACATAGTGAGGACTCCTCCTGATGCTGTTGTGGCGACTGATGGAAGTGGACATTACCGTAATGTGATGGACGCGATAAGGGCGGCGCCTGATTATAGCATGAAAAGATTTGTTATATATGTGAAGAGAGGTATTTATCTTGAATATGTTAATATTAATCTGAAGAAATGGAATATTATGATCGTTGGTGATGGCATTGATGCTACCTGTATCTCCGGTAGTCGGAATCATGCCGATGGCTATAAAACCTTCAACTCAGCCACCTTTGCAGTTGATGCTGTAGGATTTATAGCATGcaacatttcatttcaaaaCACGGCAGGACCTATGAAGGATCAGGCAGTGGCATTAAGATCAGATTCTGATCTCTCTATATTTTATCGGTGTGGGATATTCGGCTATCAAGATAGCCTATATCCCCACTCCTCGCGTCAATTCTACAAAGAGTGTAGAATTGTTGGTTCAGTTGATTTCATCTGTGGAGATGCCACAGCCGTGTTCCAAAACTGTCAAATTATAGTCAAACAAGGAACACCGGCACaaaatacaaacactattaCAGCTCAATCACGAAAATACATGAACGAATCAACCGgtttttcttttcagttttgCAACATTTCAGCAGACACTGGCCTTCGACCAACCACCCGAACATACCTTGGTAGACCGTGGGATGCTTATTCACGGACAATTTTTATGCAATCCTACATGAGTAACGTGATAAGTCCCGAAGGCTGGATACCGTGGAACACTAGTGAATTTTATTTGGACACATTGACCTATGGCGAGTACCAAAACTTTGGACCAGGTGCTAAGGTAGGAAATCGGGTGAAATGGCCAGGGTACCGTGTACTGAATAAGAGTGGTGCTCAAAAGTTCACCGTGGCTGAATTTATTGAAGGGGATCTTTGGTTACCTCCATCTGGTATTACCTACACGGCTGGTTTATCGATGTAA 1500 0.404 MDLFHNTLLLVLFFLLSSHSTSEFIGSSCLRVPPNKFVDSAKQVTTILQQLRSNLLPFNNTTSRDGIQDCLDLLDMSSEQLRMISMSAMQNSKGKYKLGTGNLSSDLRTWLSAVLANSDTCIEGLEQGTEVKGIVSTGLNRVMYLVKTLLDQVIAVRDDQVNRDQFPSWITEEDKMILRGNIVRTPPDAVVATDGSGHYRNVMDAIRAAPDYSMKRFVIYVKRGIYLEYVNINLKKWNIMIVGDGIDATCISGSRNHADGYKTFNSATFAVDAVGFIACNISFQNTAGPMKDQAVALRSDSDLSIFYRCGIFGYQDSLYPHSSRQFYKECRIVGSVDFICGDATAVFQNCQIIVKQGTPAQNTNTITAQSRKYMNESTGFSFQFCNISADTGLRPTTRTYLGRPWDAYSRTIFMQSYMSNVISPEGWIPWNTSEFYLDTLTYGEYQNFGPGAKVGNRVKWPGYRVLNKSGAQKFTVAEFIEGDLWLPPSGITYTAGLSM 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04441 499 PANTHER PECTINESTERASE 35 154 - -
Tsu04g04441 499 PANTHER PECTINESTERASE 161 497 - -
Tsu04g04441 499 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 35 154 - -
Tsu04g04441 499 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 161 497 - -
Tsu04g04441 499 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 148 IPR035513 -
Tsu04g04441 499 SUPERFAMILY Pectin lyase-like 185 496 IPR011050 -
Tsu04g04441 499 CDD PMEI-like_4 17 157 - -
Tsu04g04441 499 Pfam Plant invertase/pectin methylesterase inhibitor 30 132 IPR006501 GO:0004857
Tsu04g04441 499 Pfam Pectinesterase 188 483 IPR000070 GO:0030599|GO:0042545
Tsu04g04441 499 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 155 IPR035513 -
Tsu04g04441 499 Gene3D - 183 497 IPR012334 -
Tsu04g04441 499 SMART PMEI_2 20 156 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04441 Tsu-Chr4 52188935 52190925 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04441 8 497 Carbohydrate Esterase AT3G43270 52.124 2.80e-179 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04441 K01051 - gmx:100812756 548.895