Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04437 atggCATTTCAAGATTTCGACCTCATCACAGAACGACGAAAAAGTGAGAAGAGAGCACAACTGAAGAAAAGAATCCTCATCGGTGTTGTTTCTCTCGTTGTCCTCGCCGGTGTGATAGGTTGTGCATTTTTCGTTGCCACCTCAAAAGGCGCTTTTGGTGGTAGCAGTACGAAAGAATCTTCTCCAAGTTCTAAGGGGGGTAGCAAACAACAACATGTTGCACATTCAGAAAGGATAGTGAAATTGGTATGCAGTTCTGCAGATTACAAAGAAAAATGTGAAGGACCTCTTAACAAAGCAATGGAAAAGGATCCTAAACTTCAACACCCTAAAGATCTTCTCAAAGCATATATCAATGTTGTTGAAGACGAGGTTAACAAAGCCTTCGACAAAACAAACACATTCAAATTTGAAACTGAAGAAGAGAAAGGTGCATTTGAGGATTGTAAAAAGCTCTTTGGAGATGCTAAGGATGATTTACAAACCTCTATTGATCAACTTACTGAAACTGAATTCAAGAAACTTTCTACAAAAACACCTGACTTGAACAGTTGGTTGAGTGCTGTTATCTCTTTTCAACAGACTTGTGTTGATGGTTTTCCTGAAGGAAAACTGAAGACTAATCTTCAGAAACTTTTTGAGGATTCTAAGGAATTTGTTAGCAATTCACTTGCTATGGTCACTCAGGTTTCTACATTCCTTTCTACCGTTCAAACCCTTGCACGCGGCCGTTTGTTATTGTCCGATAACTCCCCTGTCGCTTCTTTGGATTCTGAAGGTATTCCTTCATGGATCCATGCCGACGAAAGAAGGGTGTTGAAGGCTGCTGATATTAGACCTACACCTAATGTCACTGTTGCAAAAGATGGTAGTGGTGACTTCAAAACCATCTCTGAAGCTTTAGCTAAAATTCCTCCAACCTATCCTGGAAGGTATGTGATTTTTGTTAAAGAAGGAGTATATGACGAGCAGGTGACAGTATCAaagaaaatgcaaaatgtaaCAATGTACGGTGAGGGATCACAAAAGAGTATCATCACCGGTAGCAAAAACTTTAGGGATGGAGTCAGGACCTTCCAAACTGCAAGTTTTGTGGTAGAAGGAGACGGATTTTTAGGACTAGCAATGGGATTCAGAAACACAGCTGGTCCCGATGGACATCAAGCAGTGGCAGCTAGAATCCAAGCGGACCGAGCTGTGTTTGCCAACTGTCGTTTTGAAGGGTATCAAGACACATTATACGCACAAGCACATAGACAATTTTACCGTAGTTGTATAATAACAGGAACAATCGATTTCATCTTTGGAGACGCAGCAGTTGTATTCCAAAATTGTATCATGATTGTTAGAAAACCAATGGACAATCAAGGTAACATGGTAACAGCACAAGGAAGAATGGACAAACAACAATCAACAGGAACAGTTttacaaaaatgtcaaataaaagCTGATGACACATTGATAGCtgttaaagataaaataaaaagttaccTTGGTAGACCATGGAAGGAATTTTCAAGAACAATTGTTATGGAAACTGAAATAGGTGAATTTATTCATCCAGATGGATGGACACCTTGGGAAGGAAACTTTGCATTGAATACATTGTATTATGCTGAGTATAATAACACTGGACCTGGTGCTAGTACTAGTGCTAGAGTTAAGTGGCCTGGTTACAAAGTTATTAACAAAGAAGAAGCTATTAAGTACACTGTAGCAAATTTCTTGAAAGGTCTTGTTTCTTGTGTTCCAAAAAAGATCCAATCTTTAAACATGGAGCAACAGCGACTTCAGAAAACACCACAACAACAAGACCAAGAAACCGAAGAGATTCAACATGGTCCTTTACCCGTCGAACAACTTCAGGCATCTGGTATAGCTTCACTTGACGTTAAGAAACTTAAAGATGCTGGTATTTGCACTGTTGAATCTGTTGCTTATACTCCCAGAAAGGATCTTTTGCAAATCAAAGGTATCAGTGAAGCCAAGGTTGACAAGATTATTGAAGCAGCTTCTAAGCTGGTGCCTATGGGTTTCACTAGTGCGAGTGAGCTCCATGCCCAGCGAGAATCAATTATTCAGATAACCACTGGGTCAAGAGAGCTTGACAAGATATTGGAAGGTGGAATTGAGACGGGTTCTATCACCGAGTTGTATGGAGAATTTCGATCTGGGAAGACTCAGTTGTGTCACACTCTCTGTGTCACTTGCCAATTACCACTAGATCAAGGAGGAGGTGAGGGTAAAGCTATGTACATAGATGCTGAGGGAACATTTAGGCCTCAGCGACTCTTACAGATAGCAGACAGGTATGGACTGAATGGTGCCGATGTATTGGAAAATGTCGCTTATGCTAGAGCGTATAACACTGATCATCAGTCACGGCTTCTGCTTGAAGCAGCTTCAATGATGGTGGATACAAGGTTTGCTCTAATGATAATAGACAGTGCTACTGCTCTCTATAGGACAGATTTTTCGGGAAGAGGGGAGCTTTCAGCCCGTCAAATGCATTTAGCGAAGTTCCTGAGGAGCCTTCAGAAGTTAGCAGACGAGTTCGGCGTGGCTGTTGTCTTAACAAATCAAGTAGTTTCACAGGTAGATGGTTCTGCAATGTTTGCTGGACCCCAAGTCAAGCCTATTGGAGGCAATATTATGGCTCATGCAACCACAACAAGAAAAACTCAGAGCTTAACAAGTAAGAAAACAGAGAagagaaaggaagaagaagagagaagagaagaggtGAGTGAAGCAAAAATGGGAAGTCGAGGTCCACCTCAATCCCATCCTAATTCCGCTGCCATTTCCAGAGGCTACAACTTCGCTTCCACTTGGGAACAGAATGCTCCATTGACTGAACATCAACAAAACGCGATTATTTCACTTTCGCATGCTGTTTCTGAACGACCTTTACCTCTCAAATTGGCTCAAGAGAATGCATCGGTGCAACACAATGTGTTGTCCGTTACCACTGAGGATAGTTCTTTTGATGATTCTGGGGCTATTAAAACTGTTATGGTTAATACCAATCAGTTCTACAAATGGTTTTTAGATCTTGAATCTGCCATGAAATCAGAGACAGAAGAGAAATATCAACATTATGTGAGCACTCTCACCGAGCGGATACAGACATGTGATGATATTCTTCAACAGGTTGATGACACCCTTGACTTATTCAACGAACTTCAGTTGCAGCATCAGGCGGTAGCTACAAAGACCAAGACGCTTCATGATGCATGTGATAGACTGGTACAAGAGAAGCAAAGATTGATTGATTTTGCGGAAGCACTTCGTAGTAAACTCAATTACTTTGATGAACTGGAGAATGTTGCTACCAATTTTTATTCTCCAAATATGAACGTTGGAAATGAAAACTTTCTCCCACTTCTCAAAAGGCTTGATGAATGCATCTCATATGTTGAAAGCAATCCACAGTATGCAGAATCCAGTGTTTACTTGCTTAAATTTCGGCAACTCCAGTCTCGAGCATTGGGCATGATGCGTTCTCATGTACTTGCCATTCTTAAAGGTGCCTCTTCTCAGGTCCAGGAAGCAATTCGTGGAAGTGGGGGTGACAAAGCATCTATCTCCGAGGGAGTTGAGGCTTCTGTAATATATGTTCGGTTTAAGGCAGCAGCAAGTGAGGCAAGTGTCTCCGagttatttgaaataaatctttcgATATGA 3687 0.4014 MAFQDFDLITERRKSEKRAQLKKRILIGVVSLVVLAGVIGCAFFVATSKGAFGGSSTKESSPSSKGGSKQQHVAHSERIVKLVCSSADYKEKCEGPLNKAMEKDPKLQHPKDLLKAYINVVEDEVNKAFDKTNTFKFETEEEKGAFEDCKKLFGDAKDDLQTSIDQLTETEFKKLSTKTPDLNSWLSAVISFQQTCVDGFPEGKLKTNLQKLFEDSKEFVSNSLAMVTQVSTFLSTVQTLARGRLLLSDNSPVASLDSEGIPSWIHADERRVLKAADIRPTPNVTVAKDGSGDFKTISEALAKIPPTYPGRYVIFVKEGVYDEQVTVSKKMQNVTMYGEGSQKSIITGSKNFRDGVRTFQTASFVVEGDGFLGLAMGFRNTAGPDGHQAVAARIQADRAVFANCRFEGYQDTLYAQAHRQFYRSCIITGTIDFIFGDAAVVFQNCIMIVRKPMDNQGNMVTAQGRMDKQQSTGTVLQKCQIKADDTLIAVKDKIKSYLGRPWKEFSRTIVMETEIGEFIHPDGWTPWEGNFALNTLYYAEYNNTGPGASTSARVKWPGYKVINKEEAIKYTVANFLKGLVSCVPKKIQSLNMEQQRLQKTPQQQDQETEEIQHGPLPVEQLQASGIASLDVKKLKDAGICTVESVAYTPRKDLLQIKGISEAKVDKIIEAASKLVPMGFTSASELHAQRESIIQITTGSRELDKILEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRYGLNGADVLENVAYARAYNTDHQSRLLLEAASMMVDTRFALMIIDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVLTNQVVSQVDGSAMFAGPQVKPIGGNIMAHATTTRKTQSLTSKKTEKRKEEEERREEVSEAKMGSRGPPQSHPNSAAISRGYNFASTWEQNAPLTEHQQNAIISLSHAVSERPLPLKLAQENASVQHNVLSVTTEDSSFDDSGAIKTVMVNTNQFYKWFLDLESAMKSETEEKYQHYVSTLTERIQTCDDILQQVDDTLDLFNELQLQHQAVATKTKTLHDACDRLVQEKQRLIDFAEALRSKLNYFDELENVATNFYSPNMNVGNENFLPLLKRLDECISYVESNPQYAESSVYLLKFRQLQSRALGMMRSHVLAILKGASSQVQEAIRGSGGDKASISEGVEASVIYVRFKAAASEASVSELFEINLSI 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04437 1228 MobiDBLite consensus disorder prediction 595 616 - -
Tsu04g04437 1228 Pfam Rad51 677 904 IPR013632 -
Tsu04g04437 1228 Pfam Pectinesterase 283 578 IPR000070 GO:0030599|GO:0042545
Tsu04g04437 1228 Coils Coil 899 919 - -
Tsu04g04437 1228 MobiDBLite consensus disorder prediction 595 610 - -
Tsu04g04437 1228 ProSiteProfiles RecA family profile 1. 691 862 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Tsu04g04437 1228 PANTHER PECTINESTERASE 14 578 - -
Tsu04g04437 1228 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 231 IPR035513 -
Tsu04g04437 1228 MobiDBLite consensus disorder prediction 888 933 - -
Tsu04g04437 1228 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 79 230 IPR035513 -
Tsu04g04437 1228 ProSitePatterns Pectinesterase signature 2. 427 436 IPR033131 -
Tsu04g04437 1228 Pfam Plant invertase/pectin methylesterase inhibitor 80 226 IPR006501 GO:0004857
Tsu04g04437 1228 SMART PMEI_2 75 226 IPR006501 GO:0004857
Tsu04g04437 1228 Gene3D - 614 686 - -
Tsu04g04437 1228 SUPERFAMILY Pectin lyase-like 280 578 IPR011050 -
Tsu04g04437 1228 CDD PMEI-like_3 82 232 - -
Tsu04g04437 1228 MobiDBLite consensus disorder prediction 897 919 - -
Tsu04g04437 1228 Gene3D - 691 923 IPR027417 -
Tsu04g04437 1228 Gene3D - 278 589 IPR012334 -
Tsu04g04437 1228 TIGRFAM PME_inhib: pectinesterase inhibitor domain 73 230 IPR006501 GO:0004857
Tsu04g04437 1228 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 896 IPR027417 -
Tsu04g04437 1228 MobiDBLite consensus disorder prediction 52 74 - -
Tsu04g04437 1228 SMART AAA_5 712 900 IPR003593 -
Tsu04g04437 1228 MobiDBLite consensus disorder prediction 52 70 - -
Tsu04g04437 1228 Pfam Helix-hairpin-helix domain 623 672 - -
Tsu04g04437 1228 CDD Rad51_DMC1_radA 695 892 IPR033925 GO:0003677
Tsu04g04437 1228 TIGRFAM recomb_RAD51: DNA repair protein RAD51 618 893 IPR011941 GO:0000150|GO:0000724|GO:0003690|GO:0003697|GO:0008094|GO:1990426
Tsu04g04437 1228 Pfam Sec34-like family 1034 1180 IPR007265 GO:0005801|GO:0006886|GO:0016020
Tsu04g04437 1228 PANTHER PECTINESTERASE 14 578 - -
Tsu04g04437 1228 SUPERFAMILY Rad51 N-terminal domain-like 611 678 IPR010995 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04437 Tsu-Chr4 52148617 52160018 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04437 1 578 Carbohydrate Esterase AT2G26450 48.440 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04437 - - gmx:100784679 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04437 04 52148617 52160018 Tsu04g04437 04 52148617 52160018 ECH