Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04436 ATGGCTAATTTATCTTTTAagctcttctttcttctcttaaCAATCTTCCACTCAAACACTTTAGCTTTCAACAATTCCTCCAATTCTTCCACAAAAACATTACATGCAAAGATCTCTTCTTTCTGCAAAACTACTCCATATCCTGAAGTTTGTTTCAATTCATCAAAACTATCAATCTCAATAAACATAAATCCAAACATTATTAGCATCCTTCTTAACACACTTCAAGTAGCAATATCTGAAACAACAAAACTATCTGATCAATTCAACAATGCTAAACAACATTCAAACATCATAGAGAACAAAAGAGGAGTGTTACAAGATTGCAATGAACTTCAACAATCTACTTTGACTTCCTTAAAAAGATCATTATCGGGAATTAGTTCCTCAGACTCTAGAAAGTTGGTTGATGCAAGAACATATCTCAGTGCAGCACTTACTGACAAGAACACATGTTTAGAAAGCTTAGATTCTGCTTCAGGTACAATGAAGCAAGTTTTAGTGGATTCAGTGATCAACACTTATAAGCATGTTAGTAATTCTCTGTCAATGCTCCCTGAGCCTGAGGAAAGATCCTCGAAAGGGCGTGGTAACCGGCGTTTAATGGATGCTTTAACGTGGTTGTCAAGCAAAGATCACCGCCGGTTCTTGCAAAGTACAGATGATGTGGTTGTGGCTGCAGACGGAAGTGGAAATTTTAGAACCATCAATGAAGCCATTAACTTTGTTCCAAATAACAGCTATGATAGGATAATAATCTATGTGAAAGAAGGGGTGTACGAGGAAAATGTTGAAATCTCAAGTGATAAAACCAATATTGTTTTACTTGGTGATGGAAGTGATGTCACTCTCATTACTGGCAATAGAAGTGTTGTTGATGGCTGGACCACCTTCAGATCTGCAACTTTAGcGGTCTCCGGTGAAGGTTTTCTGGCACGCGATATAGCTTTCGAGAACAAGGCAGGACCAGAGAAGCATCAAGCAGTTGCTTTAAGAGTGAATGCAGACTTAACAGCTTTTTACAAATGTGCAATGTATGGTTACCAAGACACACTTTATGTTCATTCCTTTAGACAATTCTATAGAGAATGTGACATTTTTGGGACTATAGATTACATATTTGGTAATGCAGCAGTAGTTTTACAAGCATGTAACATTGTTTCAAGAATGCCATTACCTCATCAATTCACTGTCATCACTGCACAAGCCAGAGATTCCCCTGATGAAGACACTGGCATCTCAATCCAAAATTGTTCAATTTTAGCTACTACTGATTTGTATGACAACTCTAACAACATTAAAAGTTACCTTGGAAGACCTTGGAGGGTTTATTCTAGGACTGTTTACATGGAGTCTTACATTGATGTGTTTATTGATCCAATGGGATGGACAAAGTGGTCTCATGATGATGATGGTAATAATGGGTTGGATACTTTGTATTATGGTGAGTATGCAAATTATGGACCTGGTTCTGGAACAGATAAAAGAGTGAAATGGTTAGGGTACCATTTGATGGATTTTGATAGTGCAAATAACTTCACTGTTGCTGAGTTCATTATTGGTGATGCTTGGATCGGATCTACTTCATTCCCTTATGATGATTGGATTTGA 1611 0.3681 MANLSFKLFFLLLTIFHSNTLAFNNSSNSSTKTLHAKISSFCKTTPYPEVCFNSSKLSISININPNIISILLNTLQVAISETTKLSDQFNNAKQHSNIIENKRGVLQDCNELQQSTLTSLKRSLSGISSSDSRKLVDARTYLSAALTDKNTCLESLDSASGTMKQVLVDSVINTYKHVSNSLSMLPEPEERSSKGRGNRRLMDALTWLSSKDHRRFLQSTDDVVVAADGSGNFRTINEAINFVPNNSYDRIIIYVKEGVYEENVEISSDKTNIVLLGDGSDVTLITGNRSVVDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADLTAFYKCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVLQACNIVSRMPLPHQFTVITAQARDSPDEDTGISIQNCSILATTDLYDNSNNIKSYLGRPWRVYSRTVYMESYIDVFIDPMGWTKWSHDDDGNNGLDTLYYGEYANYGPGSGTDKRVKWLGYHLMDFDSANNFTVAEFIIGDAWIGSTSFPYDDWI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04436 536 Gene3D - 217 535 IPR012334 -
Tsu04g04436 536 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 183 IPR006501 GO:0004857
Tsu04g04436 536 PANTHER PECTINESTERASE 7 534 - -
Tsu04g04436 536 Pfam Plant invertase/pectin methylesterase inhibitor 38 184 IPR006501 GO:0004857
Tsu04g04436 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 187 IPR035513 -
Tsu04g04436 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 185 IPR035513 -
Tsu04g04436 536 CDD PMEI-like_3 40 184 - -
Tsu04g04436 536 PANTHER PECTINESTERASE 7 534 - -
Tsu04g04436 536 SUPERFAMILY Pectin lyase-like 218 532 IPR011050 -
Tsu04g04436 536 SMART PMEI_2 33 184 IPR006501 GO:0004857
Tsu04g04436 536 Pfam Pectinesterase 222 522 IPR000070 GO:0030599|GO:0042545
Tsu04g04436 536 ProSitePatterns Pectinesterase signature 2. 366 375 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04436 Tsu-Chr4 52145340 52147248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04436 23 536 Carbohydrate Esterase AT2G26440 63.653 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04436 - K01051 pvu:PHAVU_003G126600g 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04436 04 52145340 52147248 Tsu04g04436 04 52145340 52147248 ECH