Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04433 ATGGATCACTTTCATACATTATTGCTAGTGTTCTTCTTGCTAGTCTCACACTCAACTTCTGAATTTGTTGGTTCATCATGTCTAAGAGTTCCTCCCAACAAATTTGTGGACTCTGCCAAACAAGTCACCACCATTTTACAACAACTACGTTCCAACTTATCACCTTTCATGTCCAACACCTCTGGAGACGGCATTTCCGTTTGCCTCGATTTACTCGACATGTCCTCCGAACAGCTTAGGATGTCTATGTCTGCTGTGCAAAATCCCAAAGAGAAAGATAGACTTGGTACTGGAAATCTAAGCTCGGATCTAAGAACATGGCTGAGTGCTGTTCTTACAAACTCAGACACATGTATTGAAGGATTAGAAGAAGGTACAGCTGTGAAGGGCATTGCATCAAAAGAGCTTAATCGTGTAATGTATTTGGTTAAGACTCTCTTAGCCCAAGTGATTCCTGTCCATGATGATCAACTCAACAAGGATCAATTTCCATCCTGGATTACTGATGAGGACAAGCTGCTACTGGGGGGAAATATATTGAGGACTCCTGATGCTGTTGTGGCAACTGATGGAAGTGGACATTACCGTAATGTGACGGACGCGATAAGGGCAGCACCTGATTTTAGCATGAAAAGATATGTTATATATGTGAAACAAGGTGTTTATCGCGATGAATATGTTAGAATCAATGCAACGAAATGGAACATTATGCTCTTAGGTGATGGCATTGGTGTTACTGTTATCTCCGGTAGTCGGAATTATATCGACGGTTATAAAACTTTCAACACGGCTACTTTCGCTGTTGATGCTGTAGGGTTTATAGCATGcaacatttcatttcaaaaCACTGCAGGACCTGAGAAGGCAATGGCAGTAGCTTTAAGGTCAGATTCGGATCTCTCTATATTTTATCGGTGTGGGATATTCGGCTATCAAGATAGCCTATATCCCCACTCTAAGCGTCAATTCTACAAGGAGTGTATAATTTCCGCTGACCATGACCTTAAGCCAACCACGCAGACATATCTCGGTAGACCCTGGAAGAATTTTTCACGGACAATTTTTATGGAGTCGTACCTAAGTAGCGTGGTAGATCCCAAAGGGTGGCTAGAGATGGAAGGAAACGCATCTTTGGCAACATTAACATATGGCGAGTACAATAATTTTGGACCGGGTGCCAAGGTGGATAACCGGGTAAAATGGTCAGGGTACCATTTATTAAGTGAGAGTGAAGCTCAAGAGTTCACCGTCGATAAATTTATTGAGGGGGATCTCTGGCTACCTTCCAATGGTATTAATTACACGGCCGGTTTATAA 1317 0.4191 MDHFHTLLLVFFLLVSHSTSEFVGSSCLRVPPNKFVDSAKQVTTILQQLRSNLSPFMSNTSGDGISVCLDLLDMSSEQLRMSMSAVQNPKEKDRLGTGNLSSDLRTWLSAVLTNSDTCIEGLEEGTAVKGIASKELNRVMYLVKTLLAQVIPVHDDQLNKDQFPSWITDEDKLLLGGNILRTPDAVVATDGSGHYRNVTDAIRAAPDFSMKRYVIYVKQGVYRDEYVRINATKWNIMLLGDGIGVTVISGSRNYIDGYKTFNTATFAVDAVGFIACNISFQNTAGPEKAMAVALRSDSDLSIFYRCGIFGYQDSLYPHSKRQFYKECIISADHDLKPTTQTYLGRPWKNFSRTIFMESYLSSVVDPKGWLEMEGNASLATLTYGEYNNFGPGAKVDNRVKWSGYHLLSESEAQEFTVDKFIEGDLWLPSNGINYTAGL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04433 438 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 26 330 - -
Tsu04g04433 438 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 338 437 - -
Tsu04g04433 438 PANTHER PECTINESTERASE 26 330 - -
Tsu04g04433 438 SUPERFAMILY Pectin lyase-like 183 437 IPR011050 -
Tsu04g04433 438 Pfam Pectinesterase 184 332 IPR000070 GO:0030599|GO:0042545
Tsu04g04433 438 Pfam Pectinesterase 335 424 IPR000070 GO:0030599|GO:0042545
Tsu04g04433 438 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 147 IPR035513 -
Tsu04g04433 438 PANTHER PECTINESTERASE 338 437 - -
Tsu04g04433 438 Pfam Plant invertase/pectin methylesterase inhibitor 33 133 IPR006501 GO:0004857
Tsu04g04433 438 Gene3D - 180 332 IPR012334 -
Tsu04g04433 438 Gene3D - 333 438 IPR012334 -
Tsu04g04433 438 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 151 IPR035513 -
Tsu04g04433 438 CDD PMEI-like_4 17 153 - -
Tsu04g04433 438 SMART PMEI_2 18 146 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04433 Tsu-Chr4 52111183 52113347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04433 4 438 Carbohydrate Esterase AT3G43270 43.520 8.03e-136 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04433 K01051 - gmx:100810815 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04433 04 52111183 52113347 Tsu04g04433 04 52111183 52113347 ECH
Tsu04g04433 04 52111183 52113347 Tsu08g02442 08 36288629 36295687 PCT