Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04427 ATGGGTTTCTACACTCAACAATCCATCTCTAATCTAACCATAAGCCAAGCCATATATGAAGCAGCTCTTATCATAGCAGTTCTCAGATGGATCTTCTGCTTAGTTTTAAGAATAATAAACAACAGAAAATcagaacaagaacaacaacaaaaacactcTTCTTGTTGCCAAATGTTACCTTTGACAAGTTTTGGTGAAATTAAGGAAAGACATCCAGAAACAACAGAAGATTCAACATGTGCAGTTTGTTTGAACAAACTGAAAATGGAAGATGAAGTTAGAGAATTGATGAACTGTGATCATGTTTTTCATAGAGAATGCATTGATAAATGGTTACAACATggttatgaaaatgaaaatcataatcaaacttgtccactttgtaGAGCTCCTTTGATTAATAGTTTTTCAGTTTCATCTGAGATTTCAAGCTGTGCTGGATTTTCACCTCCTCAACCTAGTTGGGCTGTTGAAAGACTTCTTTATCTATTTGGAGATGATCTTTTACCttgttaa 516 0.2946 MGFYTQQSISNLTISQAIYEAALIIAVLRWIFCLVLRIINNRKSEQEQQQKHSSCCQMLPLTSFGEIKERHPETTEDSTCAVCLNKLKMEDEVRELMNCDHVFHRECIDKWLQHGYENENHNQTCPLCRAPLINSFSVSSEISSCAGFSPPQPSWAVERLLYLFGDDLLPC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04427 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 143 IPR013083 -
Tsu04g04427 171 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 170 - -
Tsu04g04427 171 SMART ring_2 80 128 IPR001841 -
Tsu04g04427 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 170 - -
Tsu04g04427 171 SUPERFAMILY RING/U-box 72 135 - -
Tsu04g04427 171 Pfam Ring finger domain 79 129 IPR001841 -
Tsu04g04427 171 ProSiteProfiles Zinc finger RING-type profile. 80 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04427 Tsu-Chr4 52058439 52059220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04427 1 170 C3H Transcription Factor Family AT3G43430 45.251 1.83e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04427 K16281 - mtr:MTR_4g124390 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04427 04 52058439 52059220 Tsu04g04427 04 52058439 52059220 ECH