Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04425 ATGACTAATACTGATAGTATCAGTAATGTTGACATTAACAGCCTCAGTGATGAAGGCTCTGTCAAGCATTTCTCTGCTAACTGGCCAATGTCAGTGAACCCTGGTGCAGCTCAATTTGCCATCCTGTATAATGGAAGTATGTGTGTATATGAAGGAATTCCTGCAGAAAAAATGAATGAAATAATGTTGATGGCTGCTGCCAATGCCAAGTCTTCTGAAATGAAGAGTGGAATTCCTTTCACTTCTCTCTTTTCCACTGCTAACAACCCTCCTTCTCCTCAAGGAACCTCTGACAATTTGCCTTCTCCTCAATCAGTCTGTTTTCCTGCTGCTGAGAAGACTTCCATTTGCAGGATGCAAGAATTTCCAATAGCACGCAGACAATCACTTCAAAGTTTTCttgagaagagaagaatgagGGTACGTAGCAAAGCACCTTATATCTCTTCAACATCAAAAGCAGCTAACAACATAGAGAACAATTTCAACCCAACAATGGTGCCACTTGAGGGCAAGTAG 519 0.4008 MTNTDSISNVDINSLSDEGSVKHFSANWPMSVNPGAAQFAILYNGSMCVYEGIPAEKMNEIMLMAAANAKSSEMKSGIPFTSLFSTANNPPSPQGTSDNLPSPQSVCFPAAEKTSICRMQEFPIARRQSLQSFLEKRRMRVRSKAPYISSTSKAANNIENNFNPTMVPLEGK 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04425 172 ProSiteProfiles Tify domain profile. 32 67 IPR010399 -
Tsu04g04425 172 SMART tify_2 32 67 IPR010399 -
Tsu04g04425 172 Pfam tify domain 34 66 IPR010399 -
Tsu04g04425 172 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 10 163 IPR040390 -
Tsu04g04425 172 PANTHER DIVERGENT CCT MOTIF PROTEIN 10 163 - -
Tsu04g04425 172 Pfam Jas motif 123 147 IPR018467 -
Tsu04g04425 172 MobiDBLite consensus disorder prediction 82 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04425 Tsu-Chr4 52041923 52044666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04425 38 156 Tify Gene Family AT5G20900 42.149 2.35e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tsu04g04425 tify 3.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04425 - K13464 gmx:100306655 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04425 04 52041923 52044666 Tsu08g02445 08 36403894 36408747 PCT