Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04424 ATGAAATTCCCTTTGGGAGCCCTTGTGACCTCATCATtgttctttcttgttttttcaCTTTCTAATGTACATGCAATCAACTCCTCATGGAAACATGCAGCTCATAATATTATTGGACCTAGCAATCCGATTAGTACCCCGAAACATCATCGGAGATCGTTTTTAGCTGGTCCATGGAAGAAAGCACAAGCCACTTTCTACGAGGGTGGCTCAGGATCATTTGGTGGAGCTTGTGGATACGAGGATGTGGTTAAAGATGGTTATGGTTTAGACACAGTAGCATTGAGCACagttttgttcaacaaaggTCTAGCATGTGGTGCATGTTATGAAATCAAATGTATGGACTCTCCTCAAGGGTGTAAGCCAGGGCAACCCTCTCTTTTTGTGACGGCTACAGACCTTTGTCCTCCCAATTATGCCCTACCAAGTGACAATGGAGGATGGTGCAACCCACCACGTGAGCACTTTGATTTAGCCAAACCAGCTTATCAGAAAATTGCTGACTGCAAAGCTGGAATTGTGCCAGTCCAATATCGCAGGGTACCATGCAAGAGGCAGGGAGGTATTCGATTCACAATCACAGGAAATCCTTACTTCAACCTAATAAAAGTGTCTAATGTTGGAGGATCTGGTGATGTAGTGGAGTGCAAAGTGACCACAAGTGATGGAAGGTGCTCCACCTCCAAGGCTGTTGCCCCTAAGGGTTGGCAGTTTGGTCAGACATTTGTAGGCAAAAACTTGGCATAA 750 0.4333 MKFPLGALVTSSLFFLVFSLSNVHAINSSWKHAAHNIIGPSNPISTPKHHRRSFLAGPWKKAQATFYEGGSGSFGGACGYEDVVKDGYGLDTVALSTVLFNKGLACGACYEIKCMDSPQGCKPGQPSLFVTATDLCPPNYALPSDNGGWCNPPREHFDLAKPAYQKIADCKAGIVPVQYRRVPCKRQGGIRFTITGNPYFNLIKVSNVGGSGDVVECKVTTSDGRCSTSKAVAPKGWQFGQTFVGKNLA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04424 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 75 189 IPR007112 -
Tsu04g04424 249 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576
Tsu04g04424 249 PRINTS Expansin/Lol pI family signature 58 73 IPR007118 GO:0005576
Tsu04g04424 249 PRINTS Expansin/Lol pI family signature 172 188 IPR007118 GO:0005576
Tsu04g04424 249 PANTHER EXPANSIN-A32 218 248 - -
Tsu04g04424 249 PANTHER EXPANSIN-A32 34 219 - -
Tsu04g04424 249 Gene3D - 42 185 IPR036908 -
Tsu04g04424 249 SUPERFAMILY Barwin-like endoglucanases 53 207 IPR036908 -
Tsu04g04424 249 SMART dpbb_1 92 179 IPR007112 -
Tsu04g04424 249 Pfam Lytic transglycolase 92 179 IPR009009 -
Tsu04g04424 249 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Tsu04g04424 249 PRINTS Expansin signature 128 138 IPR002963 GO:0009664
Tsu04g04424 249 PRINTS Expansin signature 147 164 IPR002963 GO:0009664
Tsu04g04424 249 PRINTS Expansin signature 164 177 IPR002963 GO:0009664
Tsu04g04424 249 PRINTS Expansin signature 87 101 IPR002963 GO:0009664
Tsu04g04424 249 PRINTS Expansin signature 114 125 IPR002963 GO:0009664
Tsu04g04424 249 PRINTS Expansin signature 235 249 IPR002963 GO:0009664
Tsu04g04424 249 PRINTS Expansin signature 188 200 IPR002963 GO:0009664
Tsu04g04424 249 PANTHER EXPANSIN-A15 34 219 IPR002963 GO:0009664
Tsu04g04424 249 PANTHER EXPANSIN-A15 218 248 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04424 Tsu-Chr4 52036711 52038377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04424 52 248 Expansin Gene Family AT3G55500 53.017 3.03e-85 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04424 - - gmx:100800424 352.058