Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04416 atgATCATTGGTGACAGAATCAATGCTACAGTTATCACTGGCAATCAGAGTAAGGATGATGGTTGGACTACATTCCGATCAGCCACCTTTGCCGTAGATGGTGCAGGGTTTATTGCATGCAATATTTCCTTTAAACACACAGCTGGTCCTGCAAAGCATCAAGCAGTGGCGTTAAGATCAGGTTCACAACATTCAGTTTTTTATCGATGCGGCATATTTGGATATCAAGATAGCCTATATGCTTATTCAATGACTCAATTTTATAAGGAGTGCACCATTGCCGGAACAATAGACTTTATTTGTGGAGATGCCAAGGCGGTATTCCAAGACTGCACAATACTAGCTAAAAAAGATATCCCGGAACAAAAGAATGTTATAACAACACAGTCAAGAGAAAATCCAAAAGAACCAAGCGGGTTTTCCTTCCAATTTTGTAAGATTTTAGCAGACACCGACCTTCTGCCATATGTTGGAACCATCCCAACATACTTGGGTAGACCGTGGATGGCTTATTCGCGCACGGTATTTATTCAGTCATACTTGAGTAACGCGGTAAGTCCAGCTGGTTGGATGGAATGGAATGATACTGATTTTGCTATGGACACGTTGACTTATGGAGAGTACAAGAATTATGGCCCAGGTGCTAAGGTAGCTGATCGGGTGAAATGGAGAGGCTGCCGTGTATTGAAAGAGATGGAGGCTAAAAATTTTACTGTGGCCGAATTTATTGAGGGGAATCTTTGGTTACCATCCACGGGTGTTAATTACACGACTGGTTTACAAGTGTAA 789 0.4183 MIIGDRINATVITGNQSKDDGWTTFRSATFAVDGAGFIACNISFKHTAGPAKHQAVALRSGSQHSVFYRCGIFGYQDSLYAYSMTQFYKECTIAGTIDFICGDAKAVFQDCTILAKKDIPEQKNVITTQSRENPKEPSGFSFQFCKILADTDLLPYVGTIPTYLGRPWMAYSRTVFIQSYLSNAVSPAGWMEWNDTDFAMDTLTYGEYKNYGPGAKVADRVKWRGCRVLKEMEAKNFTVAEFIEGNLWLPSTGVNYTTGLQV 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04416 262 Pfam Pectinesterase 1 246 IPR000070 GO:0030599|GO:0042545
Tsu04g04416 262 Gene3D - 1 260 IPR012334 -
Tsu04g04416 262 SUPERFAMILY Pectin lyase-like 1 259 IPR011050 -
Tsu04g04416 262 PANTHER PECTINESTERASE 2 260 - -
Tsu04g04416 262 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 2 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04416 Tsu-Chr4 51976366 51977252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04416 1 260 Carbohydrate Esterase AT3G43270 62.835 3.23e-119 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04416 K01051 - cit:102609095 362.844