Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04415 ATGTCCTCCGAACAGCTTAGGATGATGTCTATGTCTGTCATGCAAAATTCCAAAGCAGGGACTAATATTGGAAATCCACTCATTAGCTCTGAATTAAGAACAAGATTGAGTGATGTTCTTGTGAATTCAGCCACTTGCATAGAAGGATTGGAAGGATTAGAAGTGAAGGACATTGTATCAACCGGTCTTTATCGTGCAATGTCTTTGGTGGACAAGAATCTTCTTGCTCAAGTAATCCCGGTCCACTGCAATCAACTTGATGTCGATGGCCATGGATTTCCGTCTTGGATTAATGAGGAGGACAAGAAGATGTTGGGGGGAAATATAGTGATTCCTGATGTTGTTGTGGCGACCGATGGAAGTGGACATTACCGTAGTGTGATGGAGGCCGTGTCAGCGGCACCGGATTACAGCAACAAAAGATATGTTATTCATGTGAAGAAAGGTGTTTATGCCGAATATgtcaaaattcatcaaaagaaacaaaatattatgATCATTGGTGACGGAATCAATGCTACTGTTATCACTGGCAATCGGAGTAAGGTTGATGGTTGGACTACATTCCGATCAGCCACCTTTGCCGTAGATGGTGCAGGGTTTATTGCATGCAATATTTCCTTTAAAAACACAACTGATAGCCTATATGCTTATTCAATGACTCAATTTTATAAGGAGTGCACCATTGCCGGAACAATAGACTTTATTTGTGGAGATGCCAAGGCGGTATTCCAAGAGTGCACAATACTAGCTAAAAAAGGTCTCCCGGAACAAAAGAATGTTATAACAACACAGTCAAGAGAAAATCCAAAAGAACCAAGCGggtttttcttccaattttgtAAGATTTTACTATACGCTGACCTTCTGCCATATGTTGGAACCATTCCAACATACTTGGGTAGACCGTGGAAGGCTTATTCCCGCACGGTATTTATTCAGTCTTACTTAAGTAACGCGGTAAGTCCAGCTGGTTGGATGAAGTGGGATGATAATGATTTTTCTATGGACACGTTGACTTATGGAGAGTACAAGAATTATGGCCCGGGTGCTAAGGTAGTTAATCGGGTGAAATGGGGAGGCTACCATGTATTGAACGAGATGGAGGCTAAAAAATTTACCGTGGGTGAATTTATTGAAGGGAATCTTTGGCTACCATCTACGGGTGTTAATTACACGATTGGTTTATAA 1191 0.4005 MSSEQLRMMSMSVMQNSKAGTNIGNPLISSELRTRLSDVLVNSATCIEGLEGLEVKDIVSTGLYRAMSLVDKNLLAQVIPVHCNQLDVDGHGFPSWINEEDKKMLGGNIVIPDVVVATDGSGHYRSVMEAVSAAPDYSNKRYVIHVKKGVYAEYVKIHQKKQNIMIIGDGINATVITGNRSKVDGWTTFRSATFAVDGAGFIACNISFKNTTDSLYAYSMTQFYKECTIAGTIDFICGDAKAVFQECTILAKKGLPEQKNVITTQSRENPKEPSGFFFQFCKILLYADLLPYVGTIPTYLGRPWKAYSRTVFIQSYLSNAVSPAGWMKWDDNDFSMDTLTYGEYKNYGPGAKVVNRVKWGGYHVLNEMEAKKFTVGEFIEGNLWLPSTGVNYTIGL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04415 396 Gene3D - 213 396 IPR012334 -
Tsu04g04415 396 Gene3D - 108 212 IPR012334 -
Tsu04g04415 396 PANTHER PECTINESTERASE 10 211 - -
Tsu04g04415 396 SUPERFAMILY Pectin lyase-like 113 395 IPR011050 -
Tsu04g04415 396 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 213 394 - -
Tsu04g04415 396 Pfam Pectinesterase 113 212 IPR000070 GO:0030599|GO:0042545
Tsu04g04415 396 Pfam Pectinesterase 213 382 IPR000070 GO:0030599|GO:0042545
Tsu04g04415 396 PANTHER PECTINESTERASE 213 394 - -
Tsu04g04415 396 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 10 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04415 Tsu-Chr4 51969291 51971227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04415 28 396 Carbohydrate Esterase AT3G43270 51.816 3.76e-141 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04415 K01051 - gmx:100814987 429.483