Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04412 ATGGTTGCACACTGTTTGAGGGATTTAGAAGAAGGATATTTCTTCATCAGATTTTTGAGGGGGACAATAGCCAATATTGCATATGGAAAAGGAGGAGATGCATCAGAGGCAGAGATTATAGCTGCAGCAGAATTAGCAAATGCTCACAAGTTTATAAGTAGTTTGCAAAAGGGTTATGATACGATAGTAGGAGAGAGAGGAGTTCAATTATCCGGGGGACAGAAACAGCGTGTGGCAATTGCGAGAGCTATAGTGAAGAATCCAAAAATACTATTACTAGATGAAGCAACTAGTGCACTTGATGCTGAGTCTGAGAAGGTGGTTCAAGATGCACTTGATCGTGTTATAGTGGAGCGGACGACAATAATAGTAGCTCATAGGTTATCAACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGTGTTATAGCAGAGAAAGGAAAACACGAAGCATTGATACATAAGGGTGGTGACTATGCTTCTTTAGTAGCATTACACACAAGTGCTTCTACATCTTAG 525 0.3981 MVAHCLRDLEEGYFFIRFLRGTIANIAYGKGGDASEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVIVERTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALIHKGGDYASLVALHTSASTS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04412 174 PANTHER - 24 170 - -
Tsu04g04412 174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 167 IPR027417 -
Tsu04g04412 174 Gene3D - 22 169 IPR027417 -
Tsu04g04412 174 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 4 167 IPR003439 GO:0005524
Tsu04g04412 174 Pfam ABC transporter 46 98 IPR003439 GO:0005524
Tsu04g04412 174 ProSitePatterns ABC transporters family signature. 70 84 IPR017871 GO:0005524
Tsu04g04412 174 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 24 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04412 Tsu-Chr4 51948769 51952430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04412 25 171 Calmodulin-binding Proteins AT2G36910 61.074 7.69e-53 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04412 K05658 - gmx:102660078 255.373