Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04410 ATGACAATGAGTCAAACAAACAAGAGCTTTTGTGGCATGAAGCTGCTATGTTTGTTTGTATTCATAGGCTTTGTGACTGTGAAAGGGGTGGATGGTTTAGAGAATGGTAATGTGACAGACATGCAATATGTCAGAGGAAGAGGTTTCAACTATAGACCTTTGATGGTTGGTCTTACTCTTATCAATGGAGCTGCTGCTAAAGGAGCTGTCTGTCTGGATGGATCTTTACCGGCTTACCACTTCCACCGCGGATACGGTTCAGGATCAAACAGTTGGCTAGTACATTTGGAGGGAGGAGGCTGGTGTGGAACTGTCAGAAATTGTATTTATAGTAAGAAAACGCGTCATGGTTCGTCATATTTTATGGAAAAACAAATACCATTTATTGGAATATTGAGCAACAAAGCTGAAGAAAATCCAGATTTTTTCAATTGGAATAGAGTAAAAATCCGTTATTGTGATGGCGCATCATTTAGCGGAGACAGTCAAAATGAGAGAGCAGGGCTGTATTTCAGAGGGCAACGCATATGGCAAGCTGCTATGGAAGATTTAATGTCGAAAGGGATGCGCTATGCCAAACAGgcTCTTCTATCTGGATGTTCAGCAGGAGGATTATCTGCTATACTACATTGCGATGAATTTCGGGAATTGTTTCCTGGAACAACTAGAGTAAAGTGCTTTAGTGATGCTGGATTATTCCTTGACTCTATTGATGTATCTGGCCGTCGCAGTTTAAGGAATTTTTTTGGAAGTGTAGTTACCTTACAGGGTGTACAGAAGAACCTTCCAAGGAGTTGTACCAATCACCTCAATCCAATTTTGTGCTTTTTCCCTCAGCGTTTAATTGCCAATGTTAGGACACCGCTATTTCTTCTAAATGCAGCTTATGATACTTGGCAGATTCAAGCCAGTCTAGCGCCACCATCTGCGGACTATCGTTGGAATTGGTATGAATGCAGAAAAAATTATGCACGTTGCAGTTCACCACAGATACAATATCTGcaagGTTTTCGAAATCAGATGCTTAGAGTTACAAGACGCTTCTCAAAGTCGCGCCAAAACGGATTATTCATTAATTCATGTTTCGCTCACTGTCAATCTGAAAGACAGGATACATGGTTTGGCCGTGGTTCGCCTCATATTGGAAATAAAGGTATCGCAGATTCTGTTGGGAACTGGTTTTTTGACCGAGCTGGTGTCCAAGCTGTTGGGTGTGCTTACCCTTGTGACAAAACCTGCCATAATTTGGTTTTCAACTAA 1260 0.4127 MTMSQTNKSFCGMKLLCLFVFIGFVTVKGVDGLENGNVTDMQYVRGRGFNYRPLMVGLTLINGAAAKGAVCLDGSLPAYHFHRGYGSGSNSWLVHLEGGGWCGTVRNCIYSKKTRHGSSYFMEKQIPFIGILSNKAEENPDFFNWNRVKIRYCDGASFSGDSQNERAGLYFRGQRIWQAAMEDLMSKGMRYAKQALLSGCSAGGLSAILHCDEFRELFPGTTRVKCFSDAGLFLDSIDVSGRRSLRNFFGSVVTLQGVQKNLPRSCTNHLNPILCFFPQRLIANVRTPLFLLNAAYDTWQIQASLAPPSADYRWNWYECRKNYARCSSPQIQYLQGFRNQMLRVTRRFSKSRQNGLFINSCFAHCQSERQDTWFGRGSPHIGNKGIADSVGNWFFDRAGVQAVGCAYPCDKTCHNLVFN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04410 419 Pfam Pectinacetylesterase 53 398 IPR004963 GO:0016787
Tsu04g04410 419 PANTHER PECTIN ACETYLESTERASE 19 418 - -
Tsu04g04410 419 PANTHER NOTUM-RELATED 19 418 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04410 Tsu-Chr4 51937706 51941397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04410 55 418 Carbohydrate Esterase AT1G57590 69.231 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04410 K19882 - gmx:100791571 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04410 04 51937706 51941397 Tsu04g04410 04 51937706 51941397 ECH
Tsu04g04410 04 51937706 51941397 Tsu01g03623 01 44047981 44052222 ECH
Tsu04g04410 04 51937706 51941397 Tsu07g04368 07 48953254 48956694 ECH