Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04407 ATGGAAACATTAGAACAAATTGATGCTCATCAAACTCAatcctcttcatcttcatcttcttcaatagATAGTAACAACTACAGCAGTTGTTGCAGAAACAGAACTGATTTGAGCACTGACCTCAAACTTGGTCTTAGCATCTCACCTTCTTCTCAATCTCAATTACCATTCAATTCAACAACACCAAGAGAAGAAACATTTGCTTGGCCACCAGTTAATAAGTCAGTATTGAGAAGGAACAACTTTGTTGATAAGAAACAAGATGATATTCATGATCAAAGATCTTCTTTATTTGTCAAAGTTTATATGGAAGGAATCCCAATTGGTAGAAAATTAAATCTGCTTGAACATGATAGCTATGATGGACTTATTAAAGCTCTTTGTCATATGTTTAAGACCATTATTATCTCTCCTAATTCTCAACCACTTAATTCTTGGAATTTTCATGTGTTAACTTATGAGGATGAAGAAGGAGACTGGATGATGGTTGGAGATGTGCCTTGGGaGATGTTTTTGTCAAGTGTGAAGAGGCTGAAGATCACAAGAGCTAACAGCTGCTAG 561 0.3387 METLEQIDAHQTQSSSSSSSSIDSNNYSSCCRNRTDLSTDLKLGLSISPSSQSQLPFNSTTPREETFAWPPVNKSVLRRNNFVDKKQDDIHDQRSSLFVKVYMEGIPIGRKLNLLEHDSYDGLIKALCHMFKTIIISPNSQPLNSWNFHVLTYEDEEGDWMMVGDVPWEMFLSSVKRLKITRANSC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04407 186 Gene3D - 91 186 - -
Tsu04g04407 186 Pfam AUX/IAA family 53 183 IPR033389 -
Tsu04g04407 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 186 - -
Tsu04g04407 186 ProSiteProfiles PB1 domain profile. 96 185 IPR000270 GO:0005515
Tsu04g04407 186 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 186 IPR003311 GO:0005634|GO:0006355
Tsu04g04407 186 MobiDBLite consensus disorder prediction 1 27 - -
Tsu04g04407 186 SUPERFAMILY CAD & PB1 domains 94 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04407 Tsu-Chr4 51918545 51919566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04407 99 180 B3 DNA Binding Superfamily AT2G46530 40.244 2.03e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu04g04407 AUX_IAA 6.5e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04407 K14484 - gmx:100818083 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04407 04 51918545 51919566 Tsu04g04407 04 51918545 51919566 ECH