Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04402 ATGGAAGGCAAAGTTGCACTGCAAAAATTGCTACAAGTTCAGGAAAGGCTATATGATACCAATACACATGCTTCCATTAAAAATACTGTAGGAATTGGATCTAGTTGTCTGAGTTTGACTCTGAATAATAACTTAGAAGAGATCATCACTCCCCAAAATCAAGACCGCCTTATCCCCGAACTCAAATTGGGGTGGCTTGAAAATAAGGTAGAGGAGGTGAAGAAGGAAAATCAGATTTTAAGATGTATGTTAAATCAAGTAATTCAACAATATGCACTTCTTCAAACTCAATTCTCAATAGCCatgcagcagcagcagcaacaactgTCTACATCACCTAATGAAATCAATAAAGaagcaaaaatattaaaagaggAGGATGGAGCATCTGAATTAGCTTCATGTAGAAAAAAAGCTAGAGTGTCCATTAGGGCACGCTCAGATTTCTCATTGATGAATGATGGGTGTAGATGGAGAAAGTATGGACAAAAGATATCAAAGGTTAATCCCTATTGTCCACGGGCCTATTACCGTTGCAATATGGGATTAGGAACAACAACACCATGTCCCGTTCGTAAGCAGGTTCAAAGGTGTTGTGTAGATGAGACTGTATTCATCACAACCTATGAAGGGAATCATAATCATGAACTTCCAGAAGCAGCAAAGTTAATGGCAAATACAACATCAGCAGCATTGAGCATGTTTCTTTCAGGTTCAAGTTCAACCACTTTTTCAAATTCAGGCCTCTTCTCTTCCTCTGCCTCCACTGGCTTTGCTACTCTCTATTCATCATGTCCTACTATAACATTGGACTTAACTCAACCCTCTACTAACTTCTTCAAACTCCAAAATCCTATTTCTTCAAACCACTACAATTACCAAACCTTGCATGGTTACACTCAACAATTCAATGAGGGGTTGAGTTTATCTTCTAAGATTTCAACCATGATACCCTCAGAGAAAAACCTTGCCTTCATGGATGGTGTGATTGCAGCTATAGTGAAGGATCCTTCTATTAAGGCAGCATTAGATGCAGCTGTTTCTTCACTCCCTGGAGTAGTATTGCAACAGTGA 1074 0.3743 MEGKVALQKLLQVQERLYDTNTHASIKNTVGIGSSCLSLTLNNNLEEIITPQNQDRLIPELKLGWLENKVEEVKKENQILRCMLNQVIQQYALLQTQFSIAMQQQQQQLSTSPNEINKEAKILKEEDGASELASCRKKARVSIRARSDFSLMNDGCRWRKYGQKISKVNPYCPRAYYRCNMGLGTTTPCPVRKQVQRCCVDETVFITTYEGNHNHELPEAAKLMANTTSAALSMFLSGSSSTTFSNSGLFSSSASTGFATLYSSCPTITLDLTQPSTNFFKLQNPISSNHYNYQTLHGYTQQFNEGLSLSSKISTMIPSEKNLAFMDGVIAAIVKDPSIKAALDAAVSSLPGVVLQQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04402 357 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 115 350 IPR044810 GO:0003700
Tsu04g04402 357 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 115 350 - -
Tsu04g04402 357 SMART WRKY_cls 152 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g04402 357 SUPERFAMILY WRKY DNA-binding domain 145 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g04402 357 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 126 IPR044810 GO:0003700
Tsu04g04402 357 Coils Coil 70 90 - -
Tsu04g04402 357 Pfam WRKY DNA -binding domain 153 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g04402 357 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 126 - -
Tsu04g04402 357 Gene3D WRKY domain 137 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g04402 357 ProSiteProfiles WRKY domain profile. 147 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04402 Tsu-Chr4 51882738 51885025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04402 117 274 WRKY Transcription Factor Family AT4G04450 54.118 9.69e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g04402 WRKY 1.1e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04402 - - gmx:100779314 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02476 08 36794554 36800114 Tsu04g04402 04 51882738 51885025 PCT