Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04398 ATGGAACCAGAAGACTGGGATTTGAGCGGCGAAGACCTTGATTCCCTTGAAAGAGACGCTTACCAGAAAATTGCTCAACTCCGCTCCAACCCTCCTTCTTCCTCCTCTTCTCTTCCTCCATCTTCTTCTCAACAATACCATTCTCATTCTGCAAACCCTCCTCCTCAAAGAGTTGATGCTTTGCCTCAAGTTGCAAGATCACTCCCACCTTCACTCAAATCAGGAGGAGGAGGGACTAACAACACTAATGACCATTCTAAAGAATTCACAAAAGCTTCAGTCAAATTTTTTCTCCATTCCACTGGACTTATTGCAGCAAAGTTTCAATATGATCAGGTAATAGTTGCTGCTTTTAGAAGAATCCCTAAATCTTCCTGGAATGCAAAAGAACGGTTATGGATGTTCCCTGTATCTTCTTTGTCAGAAGCAGAAAAGGTTCTTAAAGAAATATCTGGTTATAATGTTCAGGTGGAGAACTTAGATCCCTTAGTGCAACGTGCTATCATTGCTTCCACTTCTGCTCCTGATCTTCGAGATCGATATGATAAGATCCCTAGCTATGTTGAATCAAAGCTTTTGCCATTTCAACGAGACGGTATAAGGTTTATATTGCAGCATGGATGTCGTGCTTTTTTAGCGGATGAAATGGGACTGGGGAAAACGTTGCAGGCCATTGCTGTAGCTTCATGCGTTCAGGATTCGTGGCCTGTTCTTATACTAGCACCATCTGCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTGTTGTCTTATCTCAAAGCGGTGGATCAAATAGAAGCGGTTTCAACATAGTATCTTCAAGTACCAAAAGCAGCATTCATCTGGATGGACTATTCAACATTATCTCATATGATTTGGTGCCAAAGATGCAAAATACGCTTATGGCGTCTGATTTTAAGGTTGTAATTGCTGATGAGTCACACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCGATTATAAAGAAAGCTAAATATGCAATATTACTTAGTGGAACTCCTGCTTTGTCTCGACCAATTGAACTATTCAAACAGCTGGAAGCTTTGTATCCTGATGTGTATAAGAATGTTCATGAATATGGTAACCGGTATTGCAAGGGTGGAGTTTTTGGACTTTATCAAGGGGCAAGTAATCATGAAGAATTGCACAATTTGATGAAGGCAACATCGATGATTAGGAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCTGTAAAGCGTAGGCAACAAGTTTTCCTAGACTTGGCCGAAAAGGACATGAAGCAAATTAATGCTCTATTTCGCGAGttggagagggtaaaagcaAAAATTAAGGCTTCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTACTCAAAAGAATATTATTAACAGgATTTATACTGATTCTGCTGAAGCCAAGATTCCTGCTGTTCTTGATTATGTTGGAACTGTAATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCTACCAATGATTGATGCGATACACGAGTTTCTTCTTAAAAAAAAGGTTGGATGCATCCGGATTGATGGAGGTACACCTTCTGGATCAAGGCAACAATTAGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATCAAAGCTGGAGGTGTCGGGTTAACGTTGACTGCTGCCAGCACAGTCATTTTTGCAGAATTGTCTTGGACTCCTGGTGATCTAATTCAGGCCGAAGACCGTGTTCATAGAATTGGCCAGGTTTCTTCGGTAAATATATACTACTTGCTTGCAAATGACACAGTTGATGATATCATATGGGACGTAGTGCAAAGCAAACTGGACAATTTGGGGCAGATGCTTGATGGCCATGAGAACACCTTAAAGGTCTCAGATTCAGATGATCAGCCACCATTGAGTAGCCCTGCAAAGCAGAAAACACTTGACCAATTTGTCAGAAGATGCGAGAATAACAGTAGTGGATCGGAACACCAGTCAACCCCCAAACGTCCTCGGTACTGA 2067 0.4069 MEPEDWDLSGEDLDSLERDAYQKIAQLRSNPPSSSSSLPPSSSQQYHSHSANPPPQRVDALPQVARSLPPSLKSGGGGTNNTNDHSKEFTKASVKFFLHSTGLIAAKFQYDQVIVAAFRRIPKSSWNAKERLWMFPVSSLSEAEKVLKEISGYNVQVENLDPLVQRAIIASTSAPDLRDRYDKIPSYVESKLLPFQRDGIRFILQHGCRAFLADEMGLGKTLQAIAVASCVQDSWPVLILAPSALRLQWASMIQQWLNIPSSDILVVLSQSGGSNRSGFNIVSSSTKSSIHLDGLFNIISYDLVPKMQNTLMASDFKVVIADESHFLKNAQAKRTTASLPIIKKAKYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGLYQGASNHEELHNLMKATSMIRRLKKDVLSELPVKRRQQVFLDLAEKDMKQINALFRELERVKAKIKASKSQEEAESLKFTQKNIINRIYTDSAEAKIPAVLDYVGTVIEAGCKFLIFAHHLPMIDAIHEFLLKKKVGCIRIDGGTPSGSRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLDNLGQMLDGHENTLKVSDSDDQPPLSSPAKQKTLDQFVRRCENNSSGSEHQSTPKRPRY 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04398 688 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 677 - -
Tsu04g04398 688 CDD SF2_C_SNF 488 612 - -
Tsu04g04398 688 ProSiteProfiles HARP domain profile. 86 162 IPR010003 -
Tsu04g04398 688 SMART helicmild6 518 601 IPR001650 -
Tsu04g04398 688 MobiDBLite consensus disorder prediction 647 663 - -
Tsu04g04398 688 Gene3D - 164 439 IPR038718 -
Tsu04g04398 688 SMART ultradead3 188 381 IPR014001 -
Tsu04g04398 688 MobiDBLite consensus disorder prediction 669 688 - -
Tsu04g04398 688 Gene3D - 440 682 IPR027417 -
Tsu04g04398 688 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 493 644 IPR001650 -
Tsu04g04398 688 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 677 IPR030101 GO:0006281|GO:0031297|GO:0036310
Tsu04g04398 688 CDD DEXHc_HARP_SMARCAL1 192 415 - -
Tsu04g04398 688 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 373 IPR014001 -
Tsu04g04398 688 MobiDBLite consensus disorder prediction 26 52 - -
Tsu04g04398 688 Pfam SNF2-related domain 206 470 IPR000330 GO:0005524|GO:0140658
Tsu04g04398 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 650 IPR027417 -
Tsu04g04398 688 MobiDBLite consensus disorder prediction 67 86 - -
Tsu04g04398 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 409 IPR027417 -
Tsu04g04398 688 Coils Coil 434 468 - -
Tsu04g04398 688 MobiDBLite consensus disorder prediction 642 663 - -
Tsu04g04398 688 MobiDBLite consensus disorder prediction 22 58 - -
Tsu04g04398 688 Pfam Helicase conserved C-terminal domain 500 601 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04398 Tsu-Chr4 51860738 51869270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04398 458 650 RAD5 or RAD16-like Gene Family AT1G02670 29.648 5.72e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu04g04398 SNF2_N 3.5e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04398 K14440 - gmx:100797654 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04398 04 51860738 51869270 Tsu04g04398 04 51860738 51869270 ECH
Tsu04g04398 04 51860738 51869270 Tsu02g03283 02 36761595 36762263 PCT