Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04394 ATGATGTCTTGTATTCCACTTCTTGTCTTGTCTGGTGCCGTAATGAGCATGGTTATTACAAAAGCATCATCCAGTGGACAAACAGCTTATTCTAAAGCAGCAACTGTAGTCGAGCAGACAATTGGTTCTATCAGAACTGTTGCGTCGTTCACCGGCGAGAAACAAGCCATAGCTAAATATGACCAGTCCTTAATTGATGCTTACAAAACTGTAGTGAAAGAGGCCCTAGCTTCTGGTTTGGGGTTTGGTTCACTCTACTTTGTTGTTATTGCAAGTTATGGTTTGGCAGTATGGTTTGGTGGAAAAATGATAATAGAGAAAGGTTATACAGGAGGGGAAGTTGTAACTATAATTTTTGCTGTATTGACTGGATCCATGTCTCTGGGACATGCATCTCCAAGCTTGGGTGCTTTTGCTGCAGGACAAGCTGCAGCATTTAAGATGTTCGAAACGATTAAAAGGAAGCCAGAAATTGATGCTTATGACACTACCGGGAAAAAGCTTGATGATATTCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGCTATCCTACAAGGCCAGATGAACTGATATTCAATGGATTTTCTCTTGCAATACCAAGTGGGACTACTGTAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTTGTCAGTTTGATAGAGAGATTTTACGATCCACAAGGTGGTGAAGTTCTCATTGATGGTATCAACCTCAAAGAATTTCAACTTAAATGGATCCGACAGAAAATTGGCCTAGTCAGTCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGTAAGGATGGTGCAACTGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCCGCCAAATTTATAGATAAACTTCCTCAGGGACTAGATACAATGGTTGGTGAGCATGGAACTCAGCTCTCCGGAGGTCAAAAGCAAAGAGTTGCAATTGCAAGAGCAATTCTGAAAGATCCAAGAATCCTACTTCTTGATGAAGCTACAAGTGCGCTTGATGCGGAATCTGAAAGAGTAGTACAAGAGGCATTGGACAGAATAATGGTAAACCGAACAACTGTCATTGTAGCTCATCGCTTAAGTACTATAAAGAATGCTGATACCATTGCGGTTATTCATCaaggaaaaataattgaaagagGTTCACATGTTCATCTCACAAGGGACCCCGATGGAGCCTATAGCCAGCTCATTAGGCTGCAAGAAATGAATGGGTCGGAACAGAATGTTGCAAATGACACAAACAAGTCAAACAGTATAGTGTTATCTGAAAAACGATCGAGTCACAGATCTTTATCCTCAAGGTCTATAAGTCAAGTGTCATCTAGAGGTGGAGACAGCGGTCGTCACTCATTCACAGCGTCCTTTGGTGTGCCGGCCACAATAGCTGGCTTCTCAGAAACCGGAGATGGTGGAACTCAAGCTCCTCCTTCAAAAGTTTCTTCACCACCGGAAGTGCCGCTTTATCGCCTGGCCTATTTAAACAAGCCAGAAATTCCTGTCTTACTTATAGGGACAGTAGCTGCAGTGCTGCACGGTGTAATATTACCGGTTTTCGGCCTCTTGCTTTCGAAAATGATAAGCATTTTCTACGAGTCACATGACGAACTTCGTCACGATTCAAAGGTTTGGGCATTAGTATTTGTTGGGTTTGGTGTTGCGTCGTTATTCATTTTTCCATGTAGATTCTACTTTTTTGGCATTGCTGGAGGTAAGTTGATCAAAAGGATAAGGAAAATGTGTTTTGAGAAGGTAGTTCACATGGAAGTAAGTTGGTTTGATGAATCTGAGCATTCAAGTGGAGCAATTGGAGCAAGGCTCTCAACCGATGCAGCTTCGATTCGAGCTTTGGTTGGTGATGCACTCGGTTTACTGGTTGGAAATATTGCTACAGCTGTAGCTGGCTTGGTAATTGCTTTTGTAGCCAGCTGGCAGCTTGCTCTTGTAATCCTTGCTTTGGTGCCTCTACTAGGACTTAATGGATTTTTGCAAATGAAGTTCTTGCAAGGGTTCAGCAATGATTCAAAGAAATTGTATGAGGAGGCAAGTCAAGTGGCAAACGATGCAGTGGGGAGTATAAGAACAATTGCTTCTTTCTGTTCTGAAGAGAAGGTGATGGacctatataagcaaaaatgtgAGGGACCAATTAAGACAGGCATACGGCGAGGGATAGTAAGTGGATTTGGTTTTGGGATATCATTCTTCGTGCTGTATGCAGTTTATGCAACCAGTTTTTATGCTGGAGCACGTCTCGTCGAGGATGGAAAAGCTTCATTCTCAGACGTTTTTCGTGTATTTTTTGCTCTAAGCATGGCAGCTATAGGACTCTCTCAATCCGGGTCGATGGTACCTGATTCAACCAAGGCAAAAAGTGCAGCTGCTTCCATATTTGCTATTCTTGATAGGAAATCACTGATAGATCCAAATGATGAATCAGGAATAACATTGGAAGAAGTCAAGGGAGAAATTGAGTTAAAACATGTCAGTTTCAAGTATCCTACTAGACCCGATGTTCAAATATTCAGAGATCTTAGCTTGACTATTCACTGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGCGGAAAATCAACAGTGATATCGTTAATACAAAGATTTTATGATCCAGATTCAGGTCACATTACACTTGATGGAAAAGAAATCCAAAGTCTGCAAGTGAAATGGCTAAGACAACAAATGGGTCTAGTAAGCCAAGAGCCTGTTCTTTTCAATGATACCATCAGAGCCAATATTGCATACGGAAAAGGAGGAGATGCATCGGAAGCAGAGATTATAGCTGCAGCAGAATTAGCAAATGCTCACAAGTTTATAAGTAGTTTGCAAAAGGGGTATGATACAATAGTCGGGGAGAGAGGGACTCAACTATCTGGAGGACAGAAGCAACGTGTGGCAATTGCAAGAGCCATAGTTAACAGTCCAAGAATATTACTATTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAGGGTAGACAGAACCACCATTGTGGTAGCTCATAGATTATCTACCATAAAGGGTGCAAATTCAATTGCAGTTGTTAAAAATGGAGTGattgaagaaaaaggaaagcaTGACACATTGCTCAACAAGGGTGGTACCTATGCTTCTTTAGTATCATTGCATACAAGTAGTACA 3234 0.4122 MMSCIPLLVLSGAVMSMVITKASSSGQTAYSKAATVVEQTIGSIRTVASFTGEKQAIAKYDQSLIDAYKTVVKEALASGLGFGSLYFVVIASYGLAVWFGGKMIIEKGYTGGEVVTIIFAVLTGSMSLGHASPSLGAFAAGQAAAFKMFETIKRKPEIDAYDTTGKKLDDIRGDIELREVCFSYPTRPDELIFNGFSLAIPSGTTVALVGQSGSGKSTVVSLIERFYDPQGGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTIKNADTIAVIHQGKIIERGSHVHLTRDPDGAYSQLIRLQEMNGSEQNVANDTNKSNSIVLSEKRSSHRSLSSRSISQVSSRGGDSGRHSFTASFGVPATIAGFSETGDGGTQAPPSKVSSPPEVPLYRLAYLNKPEIPVLLIGTVAAVLHGVILPVFGLLLSKMISIFYESHDELRHDSKVWALVFVGFGVASLFIFPCRFYFFGIAGGKLIKRIRKMCFEKVVHMEVSWFDESEHSSGAIGARLSTDAASIRALVGDALGLLVGNIATAVAGLVIAFVASWQLALVILALVPLLGLNGFLQMKFLQGFSNDSKKLYEEASQVANDAVGSIRTIASFCSEEKVMDLYKQKCEGPIKTGIRRGIVSGFGFGISFFVLYAVYATSFYAGARLVEDGKASFSDVFRVFFALSMAAIGLSQSGSMVPDSTKAKSAAASIFAILDRKSLIDPNDESGITLEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIHCGKTVALVGESGSGKSTVISLIQRFYDPDSGHITLDGKEIQSLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDASEAEIIAAAELANAHKFISSLQKGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVSLHTSST 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04394 1078 MobiDBLite consensus disorder prediction 417 462 - -
Tsu04g04394 1078 Pfam ABC transporter transmembrane region 514 784 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g04394 1078 Pfam ABC transporter transmembrane region 1 126 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g04394 1078 Pfam ABC transporter 855 1004 IPR003439 GO:0005524
Tsu04g04394 1078 PANTHER - 1 1075 - -
Tsu04g04394 1078 ProSitePatterns ABC transporters family signature. 976 990 IPR017871 GO:0005524
Tsu04g04394 1078 ProSitePatterns ABC transporters family signature. 314 328 IPR017871 GO:0005524
Tsu04g04394 1078 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 140 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g04394 1078 CDD ABC_MTABC3_MDL1_MDL2 175 413 - -
Tsu04g04394 1078 SUPERFAMILY ABC transporter transmembrane region 2 159 IPR036640 GO:0005524|GO:0016021
Tsu04g04394 1078 Gene3D ABC transporter type 1, transmembrane domain 1 427 IPR036640 GO:0005524|GO:0016021
Tsu04g04394 1078 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 411 IPR003439 GO:0005524
Tsu04g04394 1078 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 836 1073 IPR003439 GO:0005524
Tsu04g04394 1078 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 515 801 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g04394 1078 SMART AAA_5 202 403 IPR003593 -
Tsu04g04394 1078 SMART AAA_5 863 1057 IPR003593 -
Tsu04g04394 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 413 IPR027417 -
Tsu04g04394 1078 CDD ABC_MTABC3_MDL1_MDL2 836 1071 - -
Tsu04g04394 1078 Pfam ABC transporter 194 342 IPR003439 GO:0005524
Tsu04g04394 1078 Gene3D ABC transporter type 1, transmembrane domain 496 803 IPR036640 GO:0005524|GO:0016021
Tsu04g04394 1078 Gene3D ABC transporter type 1, transmembrane domain 804 825 IPR036640 GO:0005524|GO:0016021
Tsu04g04394 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 1073 IPR027417 -
Tsu04g04394 1078 SUPERFAMILY ABC transporter transmembrane region 502 820 IPR036640 GO:0005524|GO:0016021
Tsu04g04394 1078 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 1 1075 - -
Tsu04g04394 1078 MobiDBLite consensus disorder prediction 417 461 - -
Tsu04g04394 1078 CDD ABC_6TM_Pgp_ABCB1_D2_like 504 819 - -
Tsu04g04394 1078 Gene3D - 165 414 IPR027417 -
Tsu04g04394 1078 Gene3D - 826 1075 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04394 Tsu-Chr4 51808559 51838670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04394 17 419 Calmodulin-binding Proteins AT2G36910 45.813 1.43e-100 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04394 K05658 - gmx:100800293 1667.9