Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04393 ATGGCAACGGATAACAGTTTCGAAGGAGATATTCCGAGTCTTCAACTAGTTGTGGATATTGACAGAAAGCAAGATTCAGAGAAGAGTAAGGCCAAAGATGAAAAAACCGACACAGTGCCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCGTTTATTGATGTTGGTGGGGACTGTGGGTGCTATTGGGAATGGACTATCTATACCCTTGATGCTTTTAATATTTGGATCTTTGATCAATTCATTTGGAGATTCCACGGACGCAAACGTTGTTGATGAAGTCTCCAAGGTGTCTCTAAAATTTGTATACTTGGGGGCAGGTGCCTTTGTTGCGTCATTTTTGCAGTTAACTTGCTGGATGATCACTGGAGAGAGACAGGCTGCAAGAATTAGAGGCTTATACCTTAAAACAATTTTGAGACAAGATGTGAGCTTCTTTGATAAGGAAACTAACACTGGCGAGGTTGTTGGAAGGATGTCGGGTGATACTGTTCTTATTAATGATGCCATGGGGGAGAAGGTGGGACAGTTCATACAGTTTGTATCAACTTTCATAGGAGGTTTTGTCATAGCATTCATTAAGGGATGGCTTCTAACTGTTGTCATGCTATCTAGTATACCATTTATTGTCTTGTCTGGTGCTATGACAAGTATGGCTATTGCAAAAGCAACATCAACTGGACAAGCTGCTTATTCTAAATCAGCAAGTGTGGTAGAGCAGACAATAAGTTCCATCCGAACTGTTGCATCATTCACCGGGGAGAAAGAGGCTATAGCTAAATATAATCAGTCCTTAATCAAGGTTTACAAAACTTCAGTGCAGGAGGCACTAGCATCTGGTTTGGGGTTTGCTGcactcttttttgtttttatctccAGTTATGCTTTAGCTGTATGGTTTGGTGGGAAACTGATAATAGAGAAAGGATATACAGGAGGGGATGTTATCACAATAATTTTTTGTGTATTTACTGGCGCGATGTGTCTTGGGCAGACATCTCCAAGCCTAAGTGCCTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTCGAAACGATTAAAAGGAAGCCAGAAATTGATGCCTATGACACAACTGGGAAAAAGCTTGATGATATTCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTACCCTACAAGACCAGATGAATTGATATTCAACGGATTTTCTCTTTCATTACCAAGCGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTCGTTAGTTTGATAGAGAGATTCTATGATCCAACAGATGGCGAAGTTCTCATTGATGGCATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTGGTCAGCCAAGAACCTGTTCTCTTTACTTGCAGCATTAAGGAGAATATTGCCTATGGCAAAGATGGTGCAACTGATGATGAAATCAGAGCTGCAGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTAAGGGACTAGACACGATGGTTGGTGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAGCAAAGAGTGGCAATTGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAGAGAATTGTCCAAGAGGCATTGGACAGAATAATGATAAACCGGACAACTATCGTTGTAGCTCACCGCTTAAGTACAATAAGAAATGCTGATACCATTGCTGTCATTCATCAAGGAAAAATAGTTGAAAGAGGTTCGCATGATGAGCTCACCATGGATCCCAATGGAGCCTATAGTCAGCTAATTAGACTGCAAGAAATGAAGGGGTCAGAACAAAATGATGTAAAGGACACAAACAAGTCAAACAGTATACTGCATTCTGGAAGACAATCGAGTCAAAGATCTTTTTCCTCAAGATCTATAAGCCAAGGGTCATCTGGAAACAGTGATCATCACTCATTCTCAGCATCTCATGTTGCACCGACAGCAGATGGCTTCTTAGAAACTGCAGATGGTGAACCTCAAGCTTCTCTTTCAATAGTTTCTTCACCGCCAGAAGTGCCACTCTATCGCCTGGCATATTTTAACAAGCCTGAGATTCTAGTCTTATTGATGGGGACTGTAGCTGCAGTGCTGCAAGGAGTCTTAATGCCCACTTTCGGGGTCATGCTTTCTAAAATGATAAGTGTTTTCTACAAACCAGCTCATGAACTTCGTCATGATTCAAAAATTTGGGCAATAGTGTTTGAAGCGGTTGCTGTGGCATCATTACTCATTATTCCATGTAGATTCTACCTTTTTGGTGTTGCTGGAGGTAAGTTGATCCAAAGGATCCGGAACATGAGTTTTGAGAAAATAGTTCACATGAATGTAAGTTGGTTTGATGAGGCTGAGCATTCAAGCGGATCACTTGGAGCAAGGCTCTCCACTGATGCAGCTTCAGTTAGAGCTCTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATATTGCTTCAGTAATAGCTGGCTTAGTAATTGCTTTTCAAGCATGCTGGCAGCTTGCTTTTATAGTCCTTGCTTTGGCGCCTCTATTAGGACTAAATGGATATGTGCAAGTAAAAGTCTTGAAAGGATTTAGCGCAGATGCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTAGGGAGTATAAGAACAGTTTCTTCTTTCTGTGCTGAAGAGAAAGTGATGGTGTTATATCAGGGAAAATGTGAGGGACCAATTAAGAAAGGCATAAGGCGAGGGATAATAagtggatttggatttggattatCATTCTTCGTGCTGTATTCAGTTTATTCCTGCTGTTTTTATGCTGGAGCTCGACTTGTAGAGGATGGCAAATCTACATTCTCAGATGTTTTCCTTGTCTTTTTTGCTCTCAACATGGCTGCTATGGGAATCTCTCAATCTGGGTCCTTGGTCCCTGATTCAAGTAATGCAAAAGGTGCTACTGCGTCCATATTTGCTATTCTTGATCAGAAGTCACAAATAGACCCTACTGATGAATCTGGAATGACACTGGAAGAAGTCAAGGGAGAAATTGAGTTTAACCATGTTAGTTTCAAGTATCCTATTAGACCCGATGTTCAAATATTCAGAGATCTTTGCTTGAACATTCATAGCGGCAAGACAGTTGCACTGGTTGGTGAAAGTGGAAGTGGAAAATCAACAGTGATTTCATTACTACAAAGATTCTATGACCCTGACTCAGGACACATTACACTTGATGGAATAGAAATTCAAAGGATACAAGTGAAATGGCTGAGACAACAGATGGGACTGGTAAGCCAAGAGCCAGTTCTTTTCAATGATACGGTTCGAGCCAATATTGCATATGGAAAAGGAGGAGATGCAACAGAAGCAGAAATTGTAGCTGCGGCAGAACTTGCAAATGCTCACCAGTTCATAAGTAGTTTGCAGACGGGTTATGACACGATAGTAGGCGAGAGAGGAATTCAATTATCTGGGGGACAGAAGCAGCGGGTGGCAATTGCACGAGCTATGGTAAAGAATCCAAAAATACTGCTACTAGATGAAGCGACAAGCGCACTTGATGCTGAGTCTGAAAAGGTGGTACAAGATGCACTTGACCGTGTTATGGTGGAGCGAACGACAATAATAGTGGCTCATAGGTTATCAACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAACGGTGTTATAGCAGAGAAAGGAAAACATGAAGCATTGCTCCATAAGGATGGTGATTATGCTTCTTTAGTGGCATTGCATAAACACGCCGGCGCTTCTTCATCTTAG 3849 0.4128 MATDNSFEGDIPSLQLVVDIDRKQDSEKSKAKDEKTDTVPLYKLFSFADPLDRLLMLVGTVGAIGNGLSIPLMLLIFGSLINSFGDSTDANVVDEVSKVSLKFVYLGAGAFVASFLQLTCWMITGERQAARIRGLYLKTILRQDVSFFDKETNTGEVVGRMSGDTVLINDAMGEKVGQFIQFVSTFIGGFVIAFIKGWLLTVVMLSSIPFIVLSGAMTSMAIAKATSTGQAAYSKSASVVEQTISSIRTVASFTGEKEAIAKYNQSLIKVYKTSVQEALASGLGFAALFFVFISSYALAVWFGGKLIIEKGYTGGDVITIIFCVFTGAMCLGQTSPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGKKLDDIRGDIELREVCFSYPTRPDELIFNGFSLSLPSGTTAALVGQSGSGKSTVVSLIERFYDPTDGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDDEIRAAAELANAAKFIDKLPKGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTIVVAHRLSTIRNADTIAVIHQGKIVERGSHDELTMDPNGAYSQLIRLQEMKGSEQNDVKDTNKSNSILHSGRQSSQRSFSSRSISQGSSGNSDHHSFSASHVAPTADGFLETADGEPQASLSIVSSPPEVPLYRLAYFNKPEILVLLMGTVAAVLQGVLMPTFGVMLSKMISVFYKPAHELRHDSKIWAIVFEAVAVASLLIIPCRFYLFGVAGGKLIQRIRNMSFEKIVHMNVSWFDEAEHSSGSLGARLSTDAASVRALVGDALGLLVQNIASVIAGLVIAFQACWQLAFIVLALAPLLGLNGYVQVKVLKGFSADAKKLYEEASQVANDAVGSIRTVSSFCAEEKVMVLYQGKCEGPIKKGIRRGIISGFGFGLSFFVLYSVYSCCFYAGARLVEDGKSTFSDVFLVFFALNMAAMGISQSGSLVPDSSNAKGATASIFAILDQKSQIDPTDESGMTLEEVKGEIEFNHVSFKYPIRPDVQIFRDLCLNIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGIEIQRIQVKWLRQQMGLVSQEPVLFNDTVRANIAYGKGGDATEAEIVAAAELANAHQFISSLQTGYDTIVGERGIQLSGGQKQRVAIARAMVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLHKDGDYASLVALHKHAGASSS 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04393 1282 Pfam ABC transporter transmembrane region 56 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g04393 1282 Pfam ABC transporter transmembrane region 714 986 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g04393 1282 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 339 - -
Tsu04g04393 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1036 1273 IPR003439 GO:0005524
Tsu04g04393 1282 Gene3D - 376 634 IPR027417 -
Tsu04g04393 1282 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524
Tsu04g04393 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 616 IPR027417 -
Tsu04g04393 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 614 IPR003439 GO:0005524
Tsu04g04393 1282 PANTHER - 26 1277 - -
Tsu04g04393 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 715 1001 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g04393 1282 SUPERFAMILY ABC transporter transmembrane region 702 1020 IPR036640 GO:0005524|GO:0016021
Tsu04g04393 1282 MobiDBLite consensus disorder prediction 627 666 - -
Tsu04g04393 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 343 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g04393 1282 MobiDBLite consensus disorder prediction 620 666 - -
Tsu04g04393 1282 Gene3D - 1026 1280 IPR027417 -
Tsu04g04393 1282 Pfam ABC transporter 397 545 IPR003439 GO:0005524
Tsu04g04393 1282 SUPERFAMILY ABC transporter transmembrane region 43 362 IPR036640 GO:0005524|GO:0016021
Tsu04g04393 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1272 IPR027417 -
Tsu04g04393 1282 CDD ABC_MTABC3_MDL1_MDL2 378 616 - -
Tsu04g04393 1282 ProSitePatterns ABC transporters family signature. 1176 1190 IPR017871 GO:0005524
Tsu04g04393 1282 Pfam ABC transporter 1056 1204 IPR003439 GO:0005524
Tsu04g04393 1282 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 26 1277 - -
Tsu04g04393 1282 CDD ABC_6TM_Pgp_ABCB1_D2_like 704 1019 - -
Tsu04g04393 1282 Gene3D ABC transporter type 1, transmembrane domain 101 1003 IPR036640 GO:0005524|GO:0016021
Tsu04g04393 1282 SMART AAA_5 1063 1256 IPR003593 -
Tsu04g04393 1282 SMART AAA_5 405 591 IPR003593 -
Tsu04g04393 1282 CDD ABC_MTABC3_MDL1_MDL2 1036 1271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04393 Tsu-Chr4 51795624 51801005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04393 4 1275 Calmodulin-binding Proteins AT2G36910 43.760 0.0 1049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04393 K05658 - gmx:100800293 1936.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04393 04 51795624 51801005 Tsu04g04393 04 51795624 51801005 ECH