Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04388 atggTGATATTGAACCTTGGGAAGAAGCAGAATAACTTGCATGGTGAAAAAGTAGTGAGACTTGGGAAATATGAGTTGGGTAGAATTCTTGGTGAGGGTAATTTCGGTAAAGTCAAGTTTGCTAGGAACACTGATTCTAAACAACCTTATGCTATTAAGATTATTGATAAGAACAAGATCATTGATCTCAATATCACTAACCAGATAAAGAGGGAAATAGGTGCCTTAAAGCTCCTAAGGCATCCCAATGTTGTTAAATTATACGAGGTCTTAGctagtaaaacaaaaatttacatGGTACTTGAGTATGTGACTGGAGAAGagttatttgacaaaattGCATCCAAGGGTAAACTTACAGAATTTGAAGGTAGAAAGTTGTTTCAGCAATTGATTGATGGTGTGAGCCACTGCCACAGTAAAGGTGTCTTCCATAGGGATCTCAAGCTTGAGAATGTACTTGTGGATGTCAAAGGGAATCTAAAGATAACTGATTTTGGCCTTAGTGCTTTACCCCAACAGTTTAGGGCAGATGGGTTACTGCATACAACATGTGGAAGTCCAAATTATGTTGCACCAGAGATTCTTGCTAATAGGGGCTATAATGGTGCATCATCAGATGTATGGGCATGTGGTGTTATCTTGTATGTAGTCCTAGCAGGATACCTTCCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAGAAGGTTTTGAAAGGAGATTTTCAGATGCCAAAATGGTTATCACCTGGTGCACAAAACATTATAAAGAGGATTCTTGAACCAAACCCTCAAACTAGAATAACAATGGCGGGGATCAAAGAAGATCTGTGGTTCAAGGAAGGATATAATCAAGCAGATCCTGAGGACGAAGAGGAGGATGTATACGTTGATGATCAAGCCTTTTCCGCCCATGAACTGTCacctgaagaagaaaaaaggagtTTAGAATCGCCGATCCGTATGAATGCATTTCAGTTGATAGGGATGTCTTCATGCTTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATATATCTGAGAGGAAGATAAGGTTTACAGTTGATCTTTCAGCCGAAGATCTGATGGCAAAGATTGAAAATTCTGCGACAGAAATGGAATTTAGAGTTCAAAAGAAAAATGGCAAAATGAAAGTGATACAAGAGAACAAGGAGCATAAAACTCTTGGCAGCCTCTCAGTCATAATAGAGGTTTTTGAAATAAGTTCATCATTGTATGTAGTAGAATTAAGGAAGTGCCATGGAGATGCATCTGTATATAGACAGTTATGCAAGAAGTTATTAAATGATTTGGGTGTTCCCCAAGGAAAGCACTAG 1335 0.3715 MVILNLGKKQNNLHGEKVVRLGKYELGRILGEGNFGKVKFARNTDSKQPYAIKIIDKNKIIDLNITNQIKREIGALKLLRHPNVVKLYEVLASKTKIYMVLEYVTGEELFDKIASKGKLTEFEGRKLFQQLIDGVSHCHSKGVFHRDLKLENVLVDVKGNLKITDFGLSALPQQFRADGLLHTTCGSPNYVAPEILANRGYNGASSDVWACGVILYVVLAGYLPFDDRNLAVLYQKVLKGDFQMPKWLSPGAQNIIKRILEPNPQTRITMAGIKEDLWFKEGYNQADPEDEEEDVYVDDQAFSAHELSPEEEKRSLESPIRMNAFQLIGMSSCLDLSGFFEKEDISERKIRFTVDLSAEDLMAKIENSATEMEFRVQKKNGKMKVIQENKEHKTLGSLSVIIEVFEISSSLYVVELRKCHGDASVYRQLCKKLLNDLGVPQGKH 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04388 444 CDD CIPK_C 323 434 - -
Tsu04g04388 444 SUPERFAMILY Protein kinase-like (PK-like) 20 318 IPR011009 -
Tsu04g04388 444 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Tsu04g04388 444 Pfam NAF domain 321 378 IPR004041 GO:0007165
Tsu04g04388 444 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04388 444 Gene3D Phosphorylase Kinase; domain 1 15 103 - -
Tsu04g04388 444 PANTHER SERINE/THREONINE KINASE 16 443 - -
Tsu04g04388 444 ProSiteProfiles NAF domain profile. 317 341 IPR018451 GO:0007165
Tsu04g04388 444 Gene3D Transferase(Phosphotransferase) domain 1 104 304 - -
Tsu04g04388 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Tsu04g04388 444 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04388 444 Gene3D Kinase associated domain 1, KA1 317 439 - -
Tsu04g04388 444 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04388 444 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04388 Tsu-Chr4 51760222 51766042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04388 87 439 CBL-interacting serine-threonine protein kinases AT3G17510 67.514 4.76e-167 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Tsu04g04388 Pkinase 3.4e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04388 K07198 - gmx:100777468 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04388 04 51760222 51766042 Tsu04g04388 04 51760222 51766042 ECH
Tsu04g04388 04 51760222 51766042 Tsu08g02480 08 36895898 36904168 PCT