Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04380 ATGGAGTTAACTCCAAGAGGAAGAAATAATTTAACTCCCAGAGGAAGAAATCAAGGTCATGTTGTGACTTTTGATAGAGATGCAGATTCATTTGTTGAGGAAGATAAAGAGCTTCAATCTAAATGGGCTGCTATAGAGAAATTACCGACTTTCAAAAGGATTAAAACTTCTTTTGTTGATGAAATTACTCAGGAGGAAAATGGTAGTAGATGGCAAAGAAGTAGTAGTAAAAGGGTTGTTGATGTTACTAAACTTGGAGCTGTGGATAAGCGTTTGTTTATCGATAAGCTTATAAAGCATATTGAGAATGATAATCTCAACTTACTTCAGAAACTTAGAGAAAGGATGGAAAGAGTAGATGTGAAGTTACCTAGTGTGGAAGTGAGGTACAAGAATCTGAATGTAGAAGCAGAATGTGAGGTTGTTCAAGGGAAGCCACTCCCTACTCTATGGAACTCTTTTTCTAGCTTATTTTCGGGTTTAGTGAAGACTATATATTGCAATTCTCAAGACACCAAGATGAGCATTCTGAAAGATGTCAGTGGCATCATAAAACCATCAAGGCTTACTCTTCTTCTTGGTCCACCTAGTTGTGGGAAAACTACCTTGCTAATGGCACTGGCTGGAAAATTAGAGCAATCTCTCACGgTTTCTGGAGAAATCAGTTACAATGGTCACAGGCTAGATGAATTTGTTCCTCAAAAAACATCAGCATACATAAGCCAGTATGACCTGCACATTCCTGAGATGACAGTGAGGGAAACAATTGACTTCTCGGCACGCTGTCAGGGGGTTGGAAGTAGAGCTGATATTATGACTGAAATCACcaggaaagaaaaagaacaaggAATATTCCCTGACCCGGATATTGATACCTATATGAAGGCTATTTCAGTTGAAGGACAAAGCGAAAATCTTCAGACAGAATATGTTTTAAAGATACTCGGATTGGATATTTGTGCGGACACACTTATTGGAGATGCACTAGATAGAGGCATTTCTGGTGGACAGAAGAAAAGGCTAACTACAGGAGAGATGATTGTAGGTCCCATCAAAGCACTTTTTATGGATGAAATATCAACTGGCTTAGACAGCTCCACTACTTTTCAAATAGTTACATGCCTCCAGCAATTGGTGCACATCACCGATGCAACAGCAGTGCTTTCACTCCTCCAACCAGCACCGGAAACCTTCGAGTTATTTGATGATCTTATATTGATGGCAGAGGGAAAGATAGTATACCATGGTCCCTGCAGTCAAGCAATCCAATTCTTTAGGGATTGCGGTTTCTGGTGCCCTGAAAGAAAAGGAGTGGCAGACTTTCTTCAAGAGGTAACCTCTAAGAAGGATCAAAGGCAATACTGGTACCGCACAGATATTCCTTACAGTTACGTTTCAGTGGATGACTTCTCTGAGATCTTCAAAGCAAGTTACTGGGGAAGAATGTTAGATGATGAGCTTTCAAAACCATATGATAAATCTCAATCTCATAAAAGTTCTTTATCATATAGCAAGTACTCACTGGGAAAAATGGATTTGTTTAAAGCTTGTATGAAGAGGGAGATTCTTCTGATGAAACGAAACTCGTTTATCTATATATTCAAAACTGTGCAGCTTACAATCACTGCAATCATAACAATGACGGTTTTCTTGCGCACACAGCTCGATGTGGACTTGTTAGGATCAAACTATTTATTAGGTTCATTGTACTATACACTTGTACGTCTCATGACAAATGGAGTTGCCGAGTTGATCATGACGATTACTAGACTCCCAGTTGTTTATAAGCAGAAAGCATTCTATCTGTATCCAGCTTGGGCTTACTGTCTTCCAGCTGCAATTCTAAAGATTCCATTTTCCGTTCTTGATTCTCTTGTTTGGACATCAATGACATATTATGTTATAGGCTACAGCCCAGAAATAACAAGGTTCCTCCGCCAGTTTCTTTTGCTTATCTTTCTGCATATGTCATCCACCTCCATGTGTCGTTCACTTGCCGCCGTTTTTAAAACTGATGTTGCGGCTACAACTGTTGGTTCCTTGGTCTTAGTACTCATGTTCTTGTTTGGAGGCTTTATTCTTCCTCGACCATCATTGCCAAAGTGGTTGAGATGGGGTTTTTGGCTTTCTCCCATGTCATACGGGGAAATAGGAATAACACTCAATGAATTTCTTGCTCCCCGCTGGCAAAAGATCCAAGATGGAAACATCACCATTGGAAGGGAAATTCTCAAGAGTCGTGGTTTAGACTTTGATAGTAACTTCTTCTGGATATCGATTGGAGCATTACTTGGTTTCACAGTAGTATTTGATATTCTATTTGTTGTAGCATTAACTTACTTAAAAGGTGAGTCCTATCCAAGTTATTACAAGGAAAAATACCAaatgattgtttttattttactcaTTTCACTGATTTATTTATCGGAAATGCATTCAGAGCCTAAGCAATCTCGAGCTTTAGTTTCAAAAAAGAGGCTGCCTCAACTAAAAGGAGGAGAAACAAGCAATGAACtggaattaaaaaataagtcagtAGCAGTTGATCTTAGCCACACATCAAAGGAAACTCAAAACACAgGGAAAATGGTTCTACCCTTTTTGCCACTGTCAATAGCATTTAAAGATGTCCAGTATTTTGTTGACACTCCTCCGGAGATGAAAAAACATGGTTCAAACGAGAAAAATCTACAATTGCTCTGCGATATCACGGGAGCCTTTAGGCCAGGAATCCTTACTGCACTGATGGGAGTCAGCGGAGCAGGGAAGACAACACTCATGGATGTTCTTTCAGGAAGAAAAACTGGAGGAATCATTGAAGGAGATATAAGAATTGGAGGGTACCCTAAAGTGCAAAAGACATTTGCAAGAGTTTCAGGTTACTGTGAGCAAAATGACATACATTCTCCATATATAACAGTTGAAGAATCCGTTCGATACTCAGCTTGGCTGCGGTTGCCGAGGGAGATTGATTCAGCAACAAAAGGGAAATTTGTGGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAGGACAGTTTAGTTGGCATTACTGGCCAAAGTGGATTATCGACAGAGCAACGTAAAAGACTAACCATTGCAGTGGAGCTTGTCTCGAATCCATCAATAATTTTTATGGATGAACCTACATCAGGTTTGGATGCACGAGCTGCAGCTGTTGTTATGCGTGCAGTGAAGAATGTTGTTGCCACTGGTAGGACCACGGTTTGCACTATACATCAGCCAAGCATTgatatatttgagacttttgaTGAGTTGATTCTAATGAAATCTGGAGGAAAGATCATTTATAATGGACTGCTAGGCCATCATTCAAGTAAGCTGATTGAATATTTTCAGAGTATACCGGGAGTTCCAAAGATCAAAGACAATTATAATCCTGCAACATGGATGATGGAAGCTACCTCAGCATTTGTAGAAGACGaacttaaaattgattttgctaATATATACAAAGAGTCTCCCCTTCACCGGGAAACCCTTGAAATGGTGAGAGTGTTAAGTGAACCAGAACAAGGTTCAAAAGACTTAAACTTTTCAACTCGCTTCCCACAAAATTACTTGGGGCAGTTTATGGCATGCCTATGGAAGCAACACTTATCGTATTGGAGAAGTCCCGAGTACAATTTAATAAGATTTGTGTTCATGATTGTTGCGGCAATAATATTCGGGGCAGTATTTTGGCAGAAAGGGAAGGAAATAAACACTCAGCAGGATTTGTTCAATGTGTTTGGATCGATGTATATTGCTGTAATATTCTTGGGCATAAATTACTGTTCAACAATTCTACCGTACGTGGCAACCGAGCGCTCCGTCTTGTATCGAGAAAAATTTGCAGGAATGTATTCTTCCATGGCTTATTCATTTGCACAGgtGGCTATTGAAATACCATATATCTTAGTGCAAGCAATTTTATATGTGGCTATCACATATCCAATGATAGGTTTCCATTGGTCGGTTCAGAAGGTCTTTTGGTACTTCTACACCACATTCTGCACATTTTTATACTTTGTGTATCTTGGAATGCTGATTATGTCATTAAGCTTAAATCTGGATCTAGCTTCTGTATTGTCAACTGCAGTCTACACCATATTCAACCTCTTTTCTGGATTCCTCATGCCAGGACCTAAAATTCCTAAATGGTGGGTTTGGTGCTACTGGATATGCCCTACAGCTTGGTCCTTGAAGGGCCTCCTAACTTCACAATATGGAGACATGGAGAAGGAAATACTCATATTTGGGGACAAAAAATCAGTTGGTTCCTTTCTAGAGGATTACTATGGGTTCAGGCATGATAGATTAAGTGTTGTGGCTGTTGTGCTCATTGCTTACCCAATTATTTATGCATCTCTCTTTGCCTATTGCATAGGGAAAATAAATTACCAAAAAAGATAG 4419 0.3872 MELTPRGRNNLTPRGRNQGHVVTFDRDADSFVEEDKELQSKWAAIEKLPTFKRIKTSFVDEITQEENGSRWQRSSSKRVVDVTKLGAVDKRLFIDKLIKHIENDNLNLLQKLRERMERVDVKLPSVEVRYKNLNVEAECEVVQGKPLPTLWNSFSSLFSGLVKTIYCNSQDTKMSILKDVSGIIKPSRLTLLLGPPSCGKTTLLMALAGKLEQSLTVSGEISYNGHRLDEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRADIMTEITRKEKEQGIFPDPDIDTYMKAISVEGQSENLQTEYVLKILGLDICADTLIGDALDRGISGGQKKRLTTGEMIVGPIKALFMDEISTGLDSSTTFQIVTCLQQLVHITDATAVLSLLQPAPETFELFDDLILMAEGKIVYHGPCSQAIQFFRDCGFWCPERKGVADFLQEVTSKKDQRQYWYRTDIPYSYVSVDDFSEIFKASYWGRMLDDELSKPYDKSQSHKSSLSYSKYSLGKMDLFKACMKREILLMKRNSFIYIFKTVQLTITAIITMTVFLRTQLDVDLLGSNYLLGSLYYTLVRLMTNGVAELIMTITRLPVVYKQKAFYLYPAWAYCLPAAILKIPFSVLDSLVWTSMTYYVIGYSPEITRFLRQFLLLIFLHMSSTSMCRSLAAVFKTDVAATTVGSLVLVLMFLFGGFILPRPSLPKWLRWGFWLSPMSYGEIGITLNEFLAPRWQKIQDGNITIGREILKSRGLDFDSNFFWISIGALLGFTVVFDILFVVALTYLKGESYPSYYKEKYQMIVFILLISLIYLSEMHSEPKQSRALVSKKRLPQLKGGETSNELELKNKSVAVDLSHTSKETQNTGKMVLPFLPLSIAFKDVQYFVDTPPEMKKHGSNEKNLQLLCDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQKTFARVSGYCEQNDIHSPYITVEESVRYSAWLRLPREIDSATKGKFVEEVLETIELDDIKDSLVGITGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVATGRTTVCTIHQPSIDIFETFDELILMKSGGKIIYNGLLGHHSSKLIEYFQSIPGVPKIKDNYNPATWMMEATSAFVEDELKIDFANIYKESPLHRETLEMVRVLSEPEQGSKDLNFSTRFPQNYLGQFMACLWKQHLSYWRSPEYNLIRFVFMIVAAIIFGAVFWQKGKEINTQQDLFNVFGSMYIAVIFLGINYCSTILPYVATERSVLYREKFAGMYSSMAYSFAQVAIEIPYILVQAILYVAITYPMIGFHWSVQKVFWYFYTTFCTFLYFVYLGMLIMSLSLNLDLASVLSTAVYTIFNLFSGFLMPGPKIPKWWVWCYWICPTAWSLKGLLTSQYGDMEKEILIFGDKKSVGSFLEDYYGFRHDRLSVVAVVLIAYPIIYASLFAYCIGKINYQKR 1472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04380 1472 Pfam ABC-transporter N-terminal 96 152 IPR029481 -
Tsu04g04380 1472 Pfam ABC transporter 902 1052 IPR003439 GO:0005524
Tsu04g04380 1472 Pfam ABC-2 type transporter 392 445 IPR043926 GO:0140359
Tsu04g04380 1472 Pfam ABC-2 type transporter 1081 1152 IPR043926 GO:0140359
Tsu04g04380 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 434 IPR027417 -
Tsu04g04380 1472 CDD ABCG_PDR_domain2 869 1107 IPR034003 -
Tsu04g04380 1472 Pfam ABC-2 type transporter 1198 1410 IPR013525 GO:0016020|GO:0140359
Tsu04g04380 1472 Pfam ABC-2 type transporter 513 724 IPR013525 GO:0016020|GO:0140359
Tsu04g04380 1472 SMART AAA_5 186 419 IPR003593 -
Tsu04g04380 1472 SMART AAA_5 909 1101 IPR003593 -
Tsu04g04380 1472 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 10 783 - -
Tsu04g04380 1472 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 803 1472 - -
Tsu04g04380 1472 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 783 - -
Tsu04g04380 1472 PANTHER ATP-BINDING CASSETTE TRANSPORTER 803 1472 - -
Tsu04g04380 1472 Pfam Plant PDR ABC transporter associated 729 782 IPR013581 -
Tsu04g04380 1472 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 156 434 IPR003439 GO:0005524
Tsu04g04380 1472 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 872 1125 IPR003439 GO:0005524
Tsu04g04380 1472 Pfam ABC transporter 177 359 IPR003439 GO:0005524
Tsu04g04380 1472 Gene3D - 162 426 IPR027417 -
Tsu04g04380 1472 Gene3D - 886 1118 IPR027417 -
Tsu04g04380 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 896 1106 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04380 Tsu-Chr4 51703892 51712084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04380 896 1084 Calmodulin-binding Proteins AT2G36910 28.431 7.55e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04380 K08711 - gmx:100779615 2446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04380 04 51703892 51712084 Tsu04g04380 04 51703892 51712084 ECH