Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g04380 | ATGGAGTTAACTCCAAGAGGAAGAAATAATTTAACTCCCAGAGGAAGAAATCAAGGTCATGTTGTGACTTTTGATAGAGATGCAGATTCATTTGTTGAGGAAGATAAAGAGCTTCAATCTAAATGGGCTGCTATAGAGAAATTACCGACTTTCAAAAGGATTAAAACTTCTTTTGTTGATGAAATTACTCAGGAGGAAAATGGTAGTAGATGGCAAAGAAGTAGTAGTAAAAGGGTTGTTGATGTTACTAAACTTGGAGCTGTGGATAAGCGTTTGTTTATCGATAAGCTTATAAAGCATATTGAGAATGATAATCTCAACTTACTTCAGAAACTTAGAGAAAGGATGGAAAGAGTAGATGTGAAGTTACCTAGTGTGGAAGTGAGGTACAAGAATCTGAATGTAGAAGCAGAATGTGAGGTTGTTCAAGGGAAGCCACTCCCTACTCTATGGAACTCTTTTTCTAGCTTATTTTCGGGTTTAGTGAAGACTATATATTGCAATTCTCAAGACACCAAGATGAGCATTCTGAAAGATGTCAGTGGCATCATAAAACCATCAAGGCTTACTCTTCTTCTTGGTCCACCTAGTTGTGGGAAAACTACCTTGCTAATGGCACTGGCTGGAAAATTAGAGCAATCTCTCACGgTTTCTGGAGAAATCAGTTACAATGGTCACAGGCTAGATGAATTTGTTCCTCAAAAAACATCAGCATACATAAGCCAGTATGACCTGCACATTCCTGAGATGACAGTGAGGGAAACAATTGACTTCTCGGCACGCTGTCAGGGGGTTGGAAGTAGAGCTGATATTATGACTGAAATCACcaggaaagaaaaagaacaaggAATATTCCCTGACCCGGATATTGATACCTATATGAAGGCTATTTCAGTTGAAGGACAAAGCGAAAATCTTCAGACAGAATATGTTTTAAAGATACTCGGATTGGATATTTGTGCGGACACACTTATTGGAGATGCACTAGATAGAGGCATTTCTGGTGGACAGAAGAAAAGGCTAACTACAGGAGAGATGATTGTAGGTCCCATCAAAGCACTTTTTATGGATGAAATATCAACTGGCTTAGACAGCTCCACTACTTTTCAAATAGTTACATGCCTCCAGCAATTGGTGCACATCACCGATGCAACAGCAGTGCTTTCACTCCTCCAACCAGCACCGGAAACCTTCGAGTTATTTGATGATCTTATATTGATGGCAGAGGGAAAGATAGTATACCATGGTCCCTGCAGTCAAGCAATCCAATTCTTTAGGGATTGCGGTTTCTGGTGCCCTGAAAGAAAAGGAGTGGCAGACTTTCTTCAAGAGGTAACCTCTAAGAAGGATCAAAGGCAATACTGGTACCGCACAGATATTCCTTACAGTTACGTTTCAGTGGATGACTTCTCTGAGATCTTCAAAGCAAGTTACTGGGGAAGAATGTTAGATGATGAGCTTTCAAAACCATATGATAAATCTCAATCTCATAAAAGTTCTTTATCATATAGCAAGTACTCACTGGGAAAAATGGATTTGTTTAAAGCTTGTATGAAGAGGGAGATTCTTCTGATGAAACGAAACTCGTTTATCTATATATTCAAAACTGTGCAGCTTACAATCACTGCAATCATAACAATGACGGTTTTCTTGCGCACACAGCTCGATGTGGACTTGTTAGGATCAAACTATTTATTAGGTTCATTGTACTATACACTTGTACGTCTCATGACAAATGGAGTTGCCGAGTTGATCATGACGATTACTAGACTCCCAGTTGTTTATAAGCAGAAAGCATTCTATCTGTATCCAGCTTGGGCTTACTGTCTTCCAGCTGCAATTCTAAAGATTCCATTTTCCGTTCTTGATTCTCTTGTTTGGACATCAATGACATATTATGTTATAGGCTACAGCCCAGAAATAACAAGGTTCCTCCGCCAGTTTCTTTTGCTTATCTTTCTGCATATGTCATCCACCTCCATGTGTCGTTCACTTGCCGCCGTTTTTAAAACTGATGTTGCGGCTACAACTGTTGGTTCCTTGGTCTTAGTACTCATGTTCTTGTTTGGAGGCTTTATTCTTCCTCGACCATCATTGCCAAAGTGGTTGAGATGGGGTTTTTGGCTTTCTCCCATGTCATACGGGGAAATAGGAATAACACTCAATGAATTTCTTGCTCCCCGCTGGCAAAAGATCCAAGATGGAAACATCACCATTGGAAGGGAAATTCTCAAGAGTCGTGGTTTAGACTTTGATAGTAACTTCTTCTGGATATCGATTGGAGCATTACTTGGTTTCACAGTAGTATTTGATATTCTATTTGTTGTAGCATTAACTTACTTAAAAGGTGAGTCCTATCCAAGTTATTACAAGGAAAAATACCAaatgattgtttttattttactcaTTTCACTGATTTATTTATCGGAAATGCATTCAGAGCCTAAGCAATCTCGAGCTTTAGTTTCAAAAAAGAGGCTGCCTCAACTAAAAGGAGGAGAAACAAGCAATGAACtggaattaaaaaataagtcagtAGCAGTTGATCTTAGCCACACATCAAAGGAAACTCAAAACACAgGGAAAATGGTTCTACCCTTTTTGCCACTGTCAATAGCATTTAAAGATGTCCAGTATTTTGTTGACACTCCTCCGGAGATGAAAAAACATGGTTCAAACGAGAAAAATCTACAATTGCTCTGCGATATCACGGGAGCCTTTAGGCCAGGAATCCTTACTGCACTGATGGGAGTCAGCGGAGCAGGGAAGACAACACTCATGGATGTTCTTTCAGGAAGAAAAACTGGAGGAATCATTGAAGGAGATATAAGAATTGGAGGGTACCCTAAAGTGCAAAAGACATTTGCAAGAGTTTCAGGTTACTGTGAGCAAAATGACATACATTCTCCATATATAACAGTTGAAGAATCCGTTCGATACTCAGCTTGGCTGCGGTTGCCGAGGGAGATTGATTCAGCAACAAAAGGGAAATTTGTGGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAGGACAGTTTAGTTGGCATTACTGGCCAAAGTGGATTATCGACAGAGCAACGTAAAAGACTAACCATTGCAGTGGAGCTTGTCTCGAATCCATCAATAATTTTTATGGATGAACCTACATCAGGTTTGGATGCACGAGCTGCAGCTGTTGTTATGCGTGCAGTGAAGAATGTTGTTGCCACTGGTAGGACCACGGTTTGCACTATACATCAGCCAAGCATTgatatatttgagacttttgaTGAGTTGATTCTAATGAAATCTGGAGGAAAGATCATTTATAATGGACTGCTAGGCCATCATTCAAGTAAGCTGATTGAATATTTTCAGAGTATACCGGGAGTTCCAAAGATCAAAGACAATTATAATCCTGCAACATGGATGATGGAAGCTACCTCAGCATTTGTAGAAGACGaacttaaaattgattttgctaATATATACAAAGAGTCTCCCCTTCACCGGGAAACCCTTGAAATGGTGAGAGTGTTAAGTGAACCAGAACAAGGTTCAAAAGACTTAAACTTTTCAACTCGCTTCCCACAAAATTACTTGGGGCAGTTTATGGCATGCCTATGGAAGCAACACTTATCGTATTGGAGAAGTCCCGAGTACAATTTAATAAGATTTGTGTTCATGATTGTTGCGGCAATAATATTCGGGGCAGTATTTTGGCAGAAAGGGAAGGAAATAAACACTCAGCAGGATTTGTTCAATGTGTTTGGATCGATGTATATTGCTGTAATATTCTTGGGCATAAATTACTGTTCAACAATTCTACCGTACGTGGCAACCGAGCGCTCCGTCTTGTATCGAGAAAAATTTGCAGGAATGTATTCTTCCATGGCTTATTCATTTGCACAGgtGGCTATTGAAATACCATATATCTTAGTGCAAGCAATTTTATATGTGGCTATCACATATCCAATGATAGGTTTCCATTGGTCGGTTCAGAAGGTCTTTTGGTACTTCTACACCACATTCTGCACATTTTTATACTTTGTGTATCTTGGAATGCTGATTATGTCATTAAGCTTAAATCTGGATCTAGCTTCTGTATTGTCAACTGCAGTCTACACCATATTCAACCTCTTTTCTGGATTCCTCATGCCAGGACCTAAAATTCCTAAATGGTGGGTTTGGTGCTACTGGATATGCCCTACAGCTTGGTCCTTGAAGGGCCTCCTAACTTCACAATATGGAGACATGGAGAAGGAAATACTCATATTTGGGGACAAAAAATCAGTTGGTTCCTTTCTAGAGGATTACTATGGGTTCAGGCATGATAGATTAAGTGTTGTGGCTGTTGTGCTCATTGCTTACCCAATTATTTATGCATCTCTCTTTGCCTATTGCATAGGGAAAATAAATTACCAAAAAAGATAG | 4419 | 0.3872 | MELTPRGRNNLTPRGRNQGHVVTFDRDADSFVEEDKELQSKWAAIEKLPTFKRIKTSFVDEITQEENGSRWQRSSSKRVVDVTKLGAVDKRLFIDKLIKHIENDNLNLLQKLRERMERVDVKLPSVEVRYKNLNVEAECEVVQGKPLPTLWNSFSSLFSGLVKTIYCNSQDTKMSILKDVSGIIKPSRLTLLLGPPSCGKTTLLMALAGKLEQSLTVSGEISYNGHRLDEFVPQKTSAYISQYDLHIPEMTVRETIDFSARCQGVGSRADIMTEITRKEKEQGIFPDPDIDTYMKAISVEGQSENLQTEYVLKILGLDICADTLIGDALDRGISGGQKKRLTTGEMIVGPIKALFMDEISTGLDSSTTFQIVTCLQQLVHITDATAVLSLLQPAPETFELFDDLILMAEGKIVYHGPCSQAIQFFRDCGFWCPERKGVADFLQEVTSKKDQRQYWYRTDIPYSYVSVDDFSEIFKASYWGRMLDDELSKPYDKSQSHKSSLSYSKYSLGKMDLFKACMKREILLMKRNSFIYIFKTVQLTITAIITMTVFLRTQLDVDLLGSNYLLGSLYYTLVRLMTNGVAELIMTITRLPVVYKQKAFYLYPAWAYCLPAAILKIPFSVLDSLVWTSMTYYVIGYSPEITRFLRQFLLLIFLHMSSTSMCRSLAAVFKTDVAATTVGSLVLVLMFLFGGFILPRPSLPKWLRWGFWLSPMSYGEIGITLNEFLAPRWQKIQDGNITIGREILKSRGLDFDSNFFWISIGALLGFTVVFDILFVVALTYLKGESYPSYYKEKYQMIVFILLISLIYLSEMHSEPKQSRALVSKKRLPQLKGGETSNELELKNKSVAVDLSHTSKETQNTGKMVLPFLPLSIAFKDVQYFVDTPPEMKKHGSNEKNLQLLCDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIGGYPKVQKTFARVSGYCEQNDIHSPYITVEESVRYSAWLRLPREIDSATKGKFVEEVLETIELDDIKDSLVGITGQSGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVATGRTTVCTIHQPSIDIFETFDELILMKSGGKIIYNGLLGHHSSKLIEYFQSIPGVPKIKDNYNPATWMMEATSAFVEDELKIDFANIYKESPLHRETLEMVRVLSEPEQGSKDLNFSTRFPQNYLGQFMACLWKQHLSYWRSPEYNLIRFVFMIVAAIIFGAVFWQKGKEINTQQDLFNVFGSMYIAVIFLGINYCSTILPYVATERSVLYREKFAGMYSSMAYSFAQVAIEIPYILVQAILYVAITYPMIGFHWSVQKVFWYFYTTFCTFLYFVYLGMLIMSLSLNLDLASVLSTAVYTIFNLFSGFLMPGPKIPKWWVWCYWICPTAWSLKGLLTSQYGDMEKEILIFGDKKSVGSFLEDYYGFRHDRLSVVAVVLIAYPIIYASLFAYCIGKINYQKR | 1472 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g04380 | 1472 | Pfam | ABC-transporter N-terminal | 96 | 152 | IPR029481 | - | |
Tsu04g04380 | 1472 | Pfam | ABC transporter | 902 | 1052 | IPR003439 | GO:0005524 | |
Tsu04g04380 | 1472 | Pfam | ABC-2 type transporter | 392 | 445 | IPR043926 | GO:0140359 | |
Tsu04g04380 | 1472 | Pfam | ABC-2 type transporter | 1081 | 1152 | IPR043926 | GO:0140359 | |
Tsu04g04380 | 1472 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 174 | 434 | IPR027417 | - | |
Tsu04g04380 | 1472 | CDD | ABCG_PDR_domain2 | 869 | 1107 | IPR034003 | - | |
Tsu04g04380 | 1472 | Pfam | ABC-2 type transporter | 1198 | 1410 | IPR013525 | GO:0016020|GO:0140359 | |
Tsu04g04380 | 1472 | Pfam | ABC-2 type transporter | 513 | 724 | IPR013525 | GO:0016020|GO:0140359 | |
Tsu04g04380 | 1472 | SMART | AAA_5 | 186 | 419 | IPR003593 | - | |
Tsu04g04380 | 1472 | SMART | AAA_5 | 909 | 1101 | IPR003593 | - | |
Tsu04g04380 | 1472 | PANTHER | DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN | 10 | 783 | - | - | |
Tsu04g04380 | 1472 | PANTHER | DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN | 803 | 1472 | - | - | |
Tsu04g04380 | 1472 | PANTHER | ATP-BINDING CASSETTE TRANSPORTER | 10 | 783 | - | - | |
Tsu04g04380 | 1472 | PANTHER | ATP-BINDING CASSETTE TRANSPORTER | 803 | 1472 | - | - | |
Tsu04g04380 | 1472 | Pfam | Plant PDR ABC transporter associated | 729 | 782 | IPR013581 | - | |
Tsu04g04380 | 1472 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 156 | 434 | IPR003439 | GO:0005524 | |
Tsu04g04380 | 1472 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 872 | 1125 | IPR003439 | GO:0005524 | |
Tsu04g04380 | 1472 | Pfam | ABC transporter | 177 | 359 | IPR003439 | GO:0005524 | |
Tsu04g04380 | 1472 | Gene3D | - | 162 | 426 | IPR027417 | - | |
Tsu04g04380 | 1472 | Gene3D | - | 886 | 1118 | IPR027417 | - | |
Tsu04g04380 | 1472 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 896 | 1106 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g04380 | Tsu-Chr4 | 51703892 | 51712084 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g04380 | 896 | 1084 | Calmodulin-binding Proteins | AT2G36910 | 28.431 | 7.55e-07 | 52.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g04380 | K08711 | - | gmx:100779615 | 2446 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu04g04380 | 04 | 51703892 | 51712084 | Tsu04g04380 | 04 | 51703892 | 51712084 | ECH |