Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04375 ATGATGGCTCAAACCAGAAATCACATTCAGAATCGGAACCAACAATTAGAGCTTGATGAGATACAACGTGAAGCACAGCATCGCTGGCTTCGACCTACTGAAATATGTGAGATACTTCGCAATTACCGGAAGTTTGAGTTAACACCGAATCCACCTGTTAGGCCTCCTGCTGGGTCACTATTCTTGTTTGATCGAAAAGTACTCCGTTACTTTCGCAAGGATGGACACAggtggaagaagaaaaaagatggCAAGACTATAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGCGTTGAGGTCTTGCATTGTTACTATGCTCGTGGCGAGGATAATGAAAACTTTCAAAGGAGAATTTATTGGATGCTTGATGAGAAGTTAGAGCACATTGTCCTCGTGCATTATCGAGAAATTGAAGAGGGCTGCAAGTCTGGCATCTCAAATTTGCCTGTAGTTCCAGTAACCCCGGCTGGTAGCTCTCAGAGTAGTTCAGTGCTTTCCTCTGCCAAAATAAGCTCACCAGTATCTGTTGTTCAAGTATCTTTGACATCAAGTGCAAATGAAATTGATCAGCACATAGCTTCTGAGTATGAGGATTACAAGTTACAGAATTGTCCTCAAGTCTCCTCTCATGTTCAATCTACCAGCAATTCCATGCATCATTGTGCACCTCGGCTCTCACTTGAAGCTACTGggtTTTCTGAGTTATTGAGGAACCCCTTTATTTCATCACGGACATCTCTTCGTTGCTTTTCTCCTGGTAATGACGTGCCTCCCTGGGCATTCATTCAGAACTCTAGCAGAAATGGAATTAATATATATGATAGAGAATTTCATGTTCAAGGATCAAGTGACGGCCCTGAAGCTTATTTCACTGTTGCACAAAGTAATGCAATGTTAGATGCTGTTTGCAGGACCCAGGATGGTGAAATTTTAAGGGATAGGCCCATCACTGACGTGTATATGCACCCTATTATTACAGGAGCTTCACAGACTGTTAATCAGCAAGTGAAAAAGGAGCATGATCTAGGCTCATTCAATACCCCATTCAGTGATCATGTTGATCATCCAGTTGTTGCTCCTAAAGACGTTGATGCATGCAAAGATGAGTCAGAATATGTTGAGTTTGGGGAATTTAAGAAGCTTGATAGTTTTGGACAGTGGATGGATAAGGAGATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGCAATTTTTGGAATACACTTGTTGCTGATAATAAGGATAAGGAGGTGTCTAGTTTACACCAGATTCAGCTGGATGTGAATTCATTAGGCCCTTCTCTTTCCCTAGAACAGCTATTTAGTATCCACGACTTTTCTCCAGATTGGGCATATGCTGGGGCTAGAACAAAGGTTTTAATAGTTGGCACATTTCTGGGGAATAAAAAGCTTTCTGGTGCGACCAAATGGGGATGTATGTTCGGCGAAATTGAGGTTTCTGCTGAAGTTTTGGCAGAGAATGTCATACGCTGTCAGACTCCTTTGCATTCACCTGGTCGTGTTCCATTCTATGTTACATGCAGTAATCGGTTAGCCTGTAGTGAGGTCAGAGAATTTGAATATCATGAAAATCCATCAAAATTTATAGGTCCCAACGGTGTTAAAATCTTACCAGAAGATGAGGTACAACTTCAAATTCGACTTCTTAGACTAGTAGAACTGGAACCTGACAACAAGTGGTTCAAGTGCTCTGTTCCTGAATGTGAAAAATGTAAACTTATGGAAACAATGTATTCCGTGAGAGATGATAGTGGAGTATTTGGAGAAACATTCAAGATTGATGGAAGTGATCATAATAACACTAGAGATGTATTGTTTCAGAGATTAATGAGAGACAAGCTTTATGACTGGTTGGGATTTAAGGTTCATGAAGGAGGAAAAGGACAACATATATTGGATAATGAAGGCCAAGGAGTCATACATTTGGCAGCTGCACTTGGTTATGTATGGGCTCTGGGACCATTAGTTGCCGCTGGTATCAGTCCTAACTATAGGGATGCTCATGGAAAAACAGGACTTCACTGGGCTTCATATTTTGGGAGagaagaaacgGTAATTGCGTTAGTCAAATTAGGAGCATCCCCAGGGGCCATTGAGGATCCAACATCAGCATTTCCTCGAGGACAAAAAGCAGCCGATTTAGCTTCAAGTAGAGGACATAAAGGAATTGCTGGGTATTTGGCTGAAGCAGATCTAACAAGTCAATTGTCTATGTTGACTGTCAATGAAAATGATATGTACAACATTGCCACAACTACAGCAGCTGACAGTACTTTTGAGTCTGCTGACGTTGACTCGTCTTATCTGACTATGGATGAGCAACACGGTCTGAAAGAGTCACTTGCTGCTTTCCGAAAATCAGCCCATGCAGCTGCTTTGATCCAAGAAGCCTTTAGGGCAAAATCATCCTGTCAAAGACAATTAACCAAGAGTAGTGATGATATTTCTGAAGAAGTACTTAATGTAGTTGCTGATTCTTTGAACAAGGCTCAGAAGATAGGCCACTTCGAGGATTATTTACATTTTGCAGCTTTAAGGATTCAAAAGAAATATCGTgggtggaaaggaagaaaagattttttgaaaacacGCAACCGCATAATAAAAATTCAGGCTCATTTTAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTATTTGGTCTGTTAGCATCGTAGAAAAGGCAATACTGCGTTGGAGGCGGAAAGGAGCTGGTCTGCGAGGGTTCCGGGTTGGGCAGCCAGTTGGTATCATGGCAAAAGATGCTGAGAATAGTGACGATGAGTATGACTTTCTTAGCATTGGACGGAAACAGAAATCAGATGATGTAAGGAAAGCTCTTGATAGAGTTAAGTCCATGGTTCGTAATCCAGAGGCAAGGGATCAATATATGAGGCTAATCATGCAATATCAGAATTTTAAGATTGATTATGGCGGAACCAGTCAATCACAGCATGTTGACTAG 3000 0.4053 MMAQTRNHIQNRNQQLELDEIQREAQHRWLRPTEICEILRNYRKFELTPNPPVRPPAGSLFLFDRKVLRYFRKDGHRWKKKKDGKTIREAHEKLKAGSVEVLHCYYARGEDNENFQRRIYWMLDEKLEHIVLVHYREIEEGCKSGISNLPVVPVTPAGSSQSSSVLSSAKISSPVSVVQVSLTSSANEIDQHIASEYEDYKLQNCPQVSSHVQSTSNSMHHCAPRLSLEATGFSELLRNPFISSRTSLRCFSPGNDVPPWAFIQNSSRNGINIYDREFHVQGSSDGPEAYFTVAQSNAMLDAVCRTQDGEILRDRPITDVYMHPIITGASQTVNQQVKKEHDLGSFNTPFSDHVDHPVVAPKDVDACKDESEYVEFGEFKKLDSFGQWMDKEIGGDCDNSLMASDSGNFWNTLVADNKDKEVSSLHQIQLDVNSLGPSLSLEQLFSIHDFSPDWAYAGARTKVLIVGTFLGNKKLSGATKWGCMFGEIEVSAEVLAENVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFEYHENPSKFIGPNGVKILPEDEVQLQIRLLRLVELEPDNKWFKCSVPECEKCKLMETMYSVRDDSGVFGETFKIDGSDHNNTRDVLFQRLMRDKLYDWLGFKVHEGGKGQHILDNEGQGVIHLAAALGYVWALGPLVAAGISPNYRDAHGKTGLHWASYFGREETVIALVKLGASPGAIEDPTSAFPRGQKAADLASSRGHKGIAGYLAEADLTSQLSMLTVNENDMYNIATTTAADSTFESADVDSSYLTMDEQHGLKESLAAFRKSAHAAALIQEAFRAKSSCQRQLTKSSDDISEEVLNVVADSLNKAQKIGHFEDYLHFAALRIQKKYRGWKGRKDFLKTRNRIIKIQAHFRGHQVRKQYKKVIWSVSIVEKAILRWRRKGAGLRGFRVGQPVGIMAKDAENSDDEYDFLSIGRKQKSDDVRKALDRVKSMVRNPEARDQYMRLIMQYQNFKIDYGGTSQSQHVD 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04375 999 ProSiteProfiles CG-1 DNA-binding domain profile. 18 144 IPR005559 GO:0003677
Tsu04g04375 999 Gene3D - 615 744 IPR036770 -
Tsu04g04375 999 SMART iq_5 873 895 IPR000048 GO:0005515
Tsu04g04375 999 SMART iq_5 850 872 IPR000048 GO:0005515
Tsu04g04375 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 901 IPR027417 -
Tsu04g04375 999 SUPERFAMILY E set domains 447 532 IPR014756 -
Tsu04g04375 999 SMART CG_1_2 21 139 IPR005559 GO:0003677
Tsu04g04375 999 Pfam CG-1 domain 24 137 IPR005559 GO:0003677
Tsu04g04375 999 ProSiteProfiles IQ motif profile. 874 902 IPR000048 GO:0005515
Tsu04g04375 999 ProSiteProfiles IQ motif profile. 851 880 IPR000048 GO:0005515
Tsu04g04375 999 CDD IPT 446 534 - -
Tsu04g04375 999 Pfam IPT/TIG domain 447 532 IPR002909 -
Tsu04g04375 999 SUPERFAMILY Ankyrin repeat 639 741 IPR036770 -
Tsu04g04375 999 ProSiteProfiles Ankyrin repeat profile. 679 711 IPR002110 GO:0005515
Tsu04g04375 999 Gene3D - 849 898 - -
Tsu04g04375 999 Pfam IQ calmodulin-binding motif 854 871 IPR000048 GO:0005515
Tsu04g04375 999 Pfam IQ calmodulin-binding motif 876 895 IPR000048 GO:0005515
Tsu04g04375 999 Gene3D Immunoglobulins 440 538 IPR013783 -
Tsu04g04375 999 ProSiteProfiles Ankyrin repeat region circular profile. 679 705 - -
Tsu04g04375 999 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 977 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04375 Tsu-Chr4 51669998 51678075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04375 379 979 CAMTA Transcription Factor Family AT2G22300 42.345 3.49e-152 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Tsu04g04375 CG-1 1.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04375 K21596 - gmx:100818336 1470.29