Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04364 ATGGTAGCGGAAGCCGAAATTATTTGTCAACAAACCATTTCTATGTTGGATGTAAAGTATCATCTTTGTGTTGCACAAGAACACAACAACGTCAAGGTTGAGATTTCACCTACTTCTCCTACACCTTCTCTTCCAATCTTTGCCcatGCTGTCAGTTGCTCCGAGATCATTAAAGATTCCATTTTGGAGAGCTCGGCGAAGATGTTTACCCCGAATGTGCGTTCTGGTAGCTATGCTGATATCGGACCACGGGGATCTATGGATGATGAGCACATTCAGATAGATGATCTAGCTTGTCACCTTGGATTTGTGTTCAGGTACCCGATACCAAGTGCGTTTTATGCGGTTTTTGATGGCCACGGTGGGCCTGAAGCTGCTTCCTTTGTTAAGAGGAATGCTATGagattattttttgaagatgCTGATATGCTACAATCATATGATACTGATGCGTGTTTTTTAGAGAAGTTGGAGGACTCTCATAGGAGAGCTTTTATACGGGCAGATCTTGCCTTGTCACATGAACAAAGTGTTAGTAGTTCATGTGGGACTACAGCACTTACTGCGCTTGTACTTGGAAGACATTTGCTTGTTGCTAATGCCGGTGACTGTCGAGCAGTTCTTTGCAGGAGAGGTACAGCTGTTGAGATGTCTCAAGATCACAAACCAAGTTATTTACCTGAACGAAGGAGAGTGGAGGAGATAGGCGGCTACATTGATGATGGGTATCTTAACGGTTATCTCTCGGTAACTCGTGCCCTTGGGGATTGGGACTTAAAATTTCCACTTGGGGCTGCCTCTCCTCTTATTGCTGAGCCAGATGTGCAACTGGTTACATTGACAGAAGAGGATGAGTTCTTGATTATTGCATGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGTGGATTAAGAAGGCACAACGACCCACATCAAAGTGCCAGAGATCTAGTCAAGGAAGCACTGCGCCTGAATACATCCGATAATCTCACTGTGATAGTTATATGTCTGTCACCTGTTGaaaagtttgctgaatcatgtCCACCCCAAAGGCGAAGATTCAAAGCTTGTAGTATTTCTGAAGAGGCTCGTAATAGATTGAAGAGCTTGATAGAGGGAAATTGA 1146 0.4284 MVAEAEIICQQTISMLDVKYHLCVAQEHNNVKVEISPTSPTPSLPIFAHAVSCSEIIKDSILESSAKMFTPNVRSGSYADIGPRGSMDDEHIQIDDLACHLGFVFRYPIPSAFYAVFDGHGGPEAASFVKRNAMRLFFEDADMLQSYDTDACFLEKLEDSHRRAFIRADLALSHEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGTAVEMSQDHKPSYLPERRRVEEIGGYIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVQLVTLTEEDEFLIIACDGIWDVMSSQVAVSLVRRGLRRHNDPHQSARDLVKEALRLNTSDNLTVIVICLSPVEKFAESCPPQRRRFKACSISEEARNRLKSLIEGN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04364 381 ProSiteProfiles PPM-type phosphatase domain profile. 74 344 IPR001932 -
Tsu04g04364 381 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 368 - -
Tsu04g04364 381 Pfam Protein phosphatase 2C 84 336 IPR001932 -
Tsu04g04364 381 Gene3D - 57 350 IPR036457 -
Tsu04g04364 381 ProSitePatterns PPM-type phosphatase domain signature. 113 121 IPR000222 GO:0043169
Tsu04g04364 381 SMART PP2C_SIG_2 89 344 IPR001932 -
Tsu04g04364 381 PANTHER PROTEIN PHOSPHATASE 2C 1 368 IPR015655 GO:0004722|GO:0006470
Tsu04g04364 381 SUPERFAMILY PP2C-like 67 346 IPR036457 -
Tsu04g04364 381 SMART PP2C_4 64 342 IPR001932 -
Tsu04g04364 381 CDD PP2Cc 73 344 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04364 Tsu-Chr4 51549407 51551561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04364 1 380 PP2C-type Phosphatase Gene Family AT1G48040 56.489 8.28e-147 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04364 K14803 - gmx:100775577 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04364 04 51549407 51551561 Tsu04g04364 04 51549407 51551561 ECH