Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04361 ATGGATGTAAAGGGAAACAAAAACAAGGTTATGATGAGTAGTAGTGAGGAGGATGAGATGGACCTTAGAAGAGGCCCATGGACCGTGGATGAGGACCTAACCCTCATCAATTACATTGCTACTCATGGTGAAGGTCGATGGAATACCCTAGCCAACTCTGCTGGTCTCAAACGAACGGGCAAGAGTTGTAGATTGAGGTGGTTGAACTATCTTCGACCTGATGTTAGACGGGGAAACATCACACTCGAAGAACAACTTTTGATCCTTGAGCTCCATACTCGTTGGGGTAACAGATGGTCGAAAATAGCCCAATATTTACCCGGAAGAACGGACAATGAAATAAAGAATTATTGGAGAACTCGTGTACAAAAACTTGCAAAACAACTCAAATGTGATGTCAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGACTAGTCGAACGAATTCAAGCAGCAGCCGTCGCCACTACCACCACCACAACTGTCGCCACCAATGCCACATACAACTATGCCGACAATTATCACGACGACAACATAATAGGTTCAACTCCAACAATTACAAACAATGTATTTGTGAGTTCACAACCACACATGACACAAAGTTATACCCTAGAGAGAAGCAACACAACCACATCATCGGATTCATTTGAGAATAAGGTGTCAACAATATCAGATTTGGGTGataataatcataattattACACAAGTTTTGGTAATAAGGATAACCCTAATCCTAATTTAGATTATTATCAATCCTCTCATCAACCTCCGGGATTGTTCTATCCAGAATTCGATTTTCAATCCATGGAACCAAACACGCCGTCGATGCAAAATGGGGACTCATCCGACATTTTTTGGAATTCTGAAAACATGTTGTTTTTACAGCAACAACTCATGAATGACACCATGTga 927 0.411 MDVKGNKNKVMMSSSEEDEMDLRRGPWTVDEDLTLINYIATHGEGRWNTLANSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAVATTTTTTVATNATYNYADNYHDDNIIGSTPTITNNVFVSSQPHMTQSYTLERSNTTTSSDSFENKVSTISDLGDNNHNYYTSFGNKDNPNPNLDYYQSSHQPPGLFYPEFDFQSMEPNTPSMQNGDSSDIFWNSENMLFLQQQLMNDTM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04361 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Tsu04g04361 308 SUPERFAMILY Homeodomain-like 21 118 IPR009057 -
Tsu04g04361 308 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Tsu04g04361 308 PANTHER MYB TRANSCRIPTION FACTOR 1 303 - -
Tsu04g04361 308 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Tsu04g04361 308 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Tsu04g04361 308 SMART sant 76 124 IPR001005 -
Tsu04g04361 308 SMART sant 23 73 IPR001005 -
Tsu04g04361 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Tsu04g04361 308 Gene3D - 24 76 - -
Tsu04g04361 308 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Tsu04g04361 308 Gene3D - 81 144 - -
Tsu04g04361 308 CDD SANT 26 71 IPR001005 -
Tsu04g04361 308 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 303 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tsu04g04361 308 CDD SANT 97 120 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04361 Tsu-Chr4 51523454 51525474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04361 3 176 MYB Transcription Factor Family AT5G49620 71.809 6.11e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g04361 Myb_DNA-binding 4.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04361 K09422 - gmx:100791349 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04361 04 51523454 51525474 Tsu04g04361 04 51523454 51525474 ECH