Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04336 ATGAACTACAACCGTCGTAGTCCGGGTGGTTTCCGAGCCGCTCCTCCCCATCGTAATTTTGATAGTCCCCCTCGTTGGTCTCCAGGTAGGGTTGGAGGTGGAGGTGGAGGCTTCCGTCCACCTCCTGCCGGAGATGGTTTCCGGCCGATGAGCGGTGAAGGTCCTGGTGAATTTGGATTCAATAATCATCAGTCATCGTCGTTGTCTGGTCAGAAACGAGGGTTTCCTTTCTCTGGACGTGGTGCTTCACCGGATCGCTTTGACGGTGGAAGTTTTGCCAAACTTTTTGTTGGGTCTGTTCCCCGAACAGCAATTGAGGAAGATATTCGTCCTTTGTTTGAGGAACACGGGAATGTCGTTGAGGTCGCCCTAATCAAGGATAGAAAGACAGGACAACATCAAGGTTgttgttttataaaatatgcTACCTCAGAGGAAGCTGATCAGGCAATTAGAGCACTGCACAATCAACATACCCTTCCTGGAGGTATTGGTCCCATCCAAGTGCGGTATGCTGATGGCGAACGGGAACGCCTTGGTGCAGTTGAGTACAAACTTTTTGTGGGCTCTCTGAATAAACAGGCTAGCGTAAAAGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGACAAGAAGCAGAGTCGTGGATGCGGTTTTGTCAAATATTCTAATAGAGATATGGCACTGGCAGCTATTAATGCACTTAATGGAATATATACAATGAGAGGTTGTGATCAACCACTGATTGTCCGTTTTGCTGATCCTAAAAGACCTCGTCAAGGAGATTCCAGAGGTCCTGCAATTGGAGCCTCAGGATTTGGTCCTAGATTTGATTCACCAGGCACTAGACTTCCATCAAATAATTCTGATCCTATGGGTGACCATATGCCTCCCCCTAATGCCTGGCGTCCAATCCATCAACCAAACACGGGGCCATCCTTCAATGCTGGTTTTCATGGCATGGGGCCTCCATTGATACCAAGATCTGGCGACATGGCATTGCCTATAAATGCAGGCCGTCCTATGACTGGAATGGGAGTCTCCATAGATGGTCGTTTTCAAGCTCAGTCTCCATCAGCAATGCCACAACAGAATTTCAACCAGCCTCTACCGCAAATTCCACCAGGCAATCAACAAATACCTCCATCACAGAAACCTATCCACTCATCTCAGGAGTTTCCACCTTCACACCAGTTATATCCTCAAGTTCCGATGCCCTATCCACAGACATCGACACTTCCATCTCTCAAGCAGCACAGTCAGCCACAACCTCTCTCTGCTGGTCCGCAGGGACCGGGCATAAGTGCACAATTTTCAGTTTCTCAGCCTCAAACTCAGCAGAGCAGTTTGCCTGCTACATTTCCTCAAACCTCTCTTGATACCAGCATTCAATCTACTACAACATTGACTACTCCAAGTAGACAGCAAATTCCTCCCTCCatgcagcagcagcagcagccaCAGCCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGTTGGTGTCACAACAAACTCAGACTTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCTCAGCTTCAACAACAATTACAGATGATACAACCATCCAGTCAAGCATCGACATTGCAGCATCACACAGAAGCTACTAAAACACAGTCTCAATGGGGTGGGACTGTATCACATGCAGTGACCGGCACTCATATGGCTGCACCTGCTGTAGGTGCTCCTTCATCAACATCTGATGCTTCTTCTGTACAAGCAATAGGCCAGAACACAAAATGTAATTGGACAGAGCATTTATCTCCCGAGGGCTTTAAATACTACTATAATAGTGTGTCTGGGGAAAGCCGGTGGGAGAAACCCGAAGAGTTGACATTATTTGAACAGCAAAAGCAACAGCACAGGCAGTCTGCTCAGCAGTCTCAAATTCAGTCACAGCCTTCAATACCACCCACCCAGCAAATTCCACAAAACCAACAGATTCAGCCTCAAAGTCATTTCCGAGAACAACAGGTCCAGCCTCAAAGTCATTTCCGAGAACATCAGGTTCAGCCTCAAATTGCACAAAAGCAACAGGAACCTGGTTATAAACATTTACAGCCGTCATTTGTTTCTGCTGGTGATCCTGGACGTTATTCACAGGGTATTAATACTACACAAGAGCTGATATGGAAAAACAGGCCTGCAGGAGTCTGA 2220 0.4617 MNYNRRSPGGFRAAPPHRNFDSPPRWSPGRVGGGGGGFRPPPAGDGFRPMSGEGPGEFGFNNHQSSSLSGQKRGFPFSGRGASPDRFDGGSFAKLFVGSVPRTAIEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRVEDVYLMRDDKKQSRGCGFVKYSNRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAIGASGFGPRFDSPGTRLPSNNSDPMGDHMPPPNAWRPIHQPNTGPSFNAGFHGMGPPLIPRSGDMALPINAGRPMTGMGVSIDGRFQAQSPSAMPQQNFNQPLPQIPPGNQQIPPSQKPIHSSQEFPPSHQLYPQVPMPYPQTSTLPSLKQHSQPQPLSAGPQGPGISAQFSVSQPQTQQSSLPATFPQTSLDTSIQSTTTLTTPSRQQIPPSMQQQQQPQPLQPLQQSPSQLAQLVSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQASTLQHHTEATKTQSQWGGTVSHAVTGTHMAAPAVGAPSSTSDASSVQAIGQNTKCNWTEHLSPEGFKYYYNSVSGESRWEKPEELTLFEQQKQQHRQSAQQSQIQSQPSIPPTQQIPQNQQIQPQSHFREQQVQPQSHFREHQVQPQIAQKQQEPGYKHLQPSFVSAGDPGRYSQGINTTQELIWKNRPAGV 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04336 739 MobiDBLite consensus disorder prediction 58 73 - -
Tsu04g04336 739 MobiDBLite consensus disorder prediction 264 321 - -
Tsu04g04336 739 CDD WW 601 631 IPR001202 GO:0005515
Tsu04g04336 739 MobiDBLite consensus disorder prediction 391 510 - -
Tsu04g04336 739 MobiDBLite consensus disorder prediction 638 706 - -
Tsu04g04336 739 ProSiteProfiles WW/rsp5/WWP domain profile. 598 631 IPR001202 GO:0005515
Tsu04g04336 739 ProSitePatterns WW/rsp5/WWP domain signature. 604 629 IPR001202 GO:0005515
Tsu04g04336 739 PANTHER RNA BINDING PROTEIN 44 673 - -
Tsu04g04336 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 174 IPR000504 GO:0003723
Tsu04g04336 739 MobiDBLite consensus disorder prediction 544 563 - -
Tsu04g04336 739 Pfam WW domain 603 629 IPR001202 GO:0005515
Tsu04g04336 739 MobiDBLite consensus disorder prediction 636 727 - -
Tsu04g04336 739 Gene3D - 179 272 IPR012677 -
Tsu04g04336 739 Gene3D - 597 649 - -
Tsu04g04336 739 SMART rrm1_1 94 170 IPR000504 GO:0003723
Tsu04g04336 739 SMART rrm1_1 185 260 IPR000504 GO:0003723
Tsu04g04336 739 MobiDBLite consensus disorder prediction 364 382 - -
Tsu04g04336 739 MobiDBLite consensus disorder prediction 364 510 - -
Tsu04g04336 739 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 264 IPR000504 GO:0003723
Tsu04g04336 739 Gene3D - 89 178 IPR012677 -
Tsu04g04336 739 MobiDBLite consensus disorder prediction 1 83 - -
Tsu04g04336 739 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 44 673 - -
Tsu04g04336 739 SUPERFAMILY RNA-binding domain, RBD 78 178 IPR035979 GO:0003676
Tsu04g04336 739 SUPERFAMILY RNA-binding domain, RBD 184 284 IPR035979 GO:0003676
Tsu04g04336 739 SMART ww_5 599 631 IPR001202 GO:0005515
Tsu04g04336 739 SUPERFAMILY WW domain 603 635 IPR036020 GO:0005515
Tsu04g04336 739 CDD RRM2_FCA 185 264 IPR034645 -
Tsu04g04336 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 157 IPR000504 GO:0003723
Tsu04g04336 739 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 252 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04336 Tsu-Chr4 51314579 51324301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04336 91 270 Eukaryotic Initiation Factors Gene Family AT1G71770 26.020 2.86e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04336 - - gmx:100798390 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04336 04 51314579 51324301 Tsu04g04336 04 51314579 51324301 ECH