Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04333 ATGGCGAATTCTTCTGCAGCAGCATTTTTGGATGAGATTCCAAacaagaagaacaaagaaagTTGCATAATCAATTTCCCTTTCTCACCAGCTTTACCATCTCACAGTATCTTTGATATGATTCCTTCACCACCATCACAATCTGGTGataatcatcatcaaaaagCTTCTTCCTTTGTTTACATGGACATGTTAACTACACAAGATTTCACTACTTCTTCAACTTTATTCGAATGGTTTCCCACCAATGATCCTGACCTGCAGCTACCTCCTCTACCGATAACGTCCCCGGCTGCAACGTCTGAGGTTTTGAATAATCCGGCCACCCCTGTCTCTCTTTCATCGTCAATTTCTTCGTCTTCTCATGAAGCTGGTGTTGCTAACAAATCAGTAGCAGAGAATGAAGATGAACTTGGATTTGAAGGTGGAGTAGAAGAACCAGATGAAAAAAATGGAGATCATGGGATCAGATTGGTGGAGAATCAAAATGATCAACAAGATCAGACTCAGAAACAGGTGAAACCTGCAAGGAAGAGGAAGAACACTAAGCAAAGACCACCAAGAATTACTTTCAAGACAAGGACTGATGTTGATCATTTGGATGATGGTTATAGGTGGCGCAAGTATGGTCAAAAACCTGTCAAAAACAGCCCTTATCCAAGGAGCTATTACCGTTGCACCGCCCTTGGTTGTGAGGTGAAGAAGCGTATAGAGCGTTCGTCCACTGAAGCTTCCGTGGTACTAACCAGCTATGAAGGCAACCACACCCACCATTCCCCGGAAAAGATGCGTGCTGCTAACTTTGGGATGATGCATAATCCTTCTGGTTTCCAAGAACAGATTCACCAGCACCACAATATAACTGATGGTGTTGGTGATGGTGCTCTTGGAAACCAAGTTGCAATGTCTCGATCACAACAGTATCAACAATTTCTTGATCAGAATCAGAATGTGCGTCAGCAGCAGCAAGCAGTGCCATCTTTGTTAGACTATAACAACTCCTTCAACACTGCTCCACCTGTGAGTGTTGTTAACTCTGCTGATAATTTTATGGACTCTTCAGCATCTTTTCGTCGGTTGCTTCAAAATCAAGAGAATTATGGTGAACATAATCTGGTGAGGAACAATGGAGGACTTCTTCAGGACATGGTTGTGCCAATGGAGATGGGAGGAGCTAGAGCTAGAGCTGGAGTTGGAGAAGGAACTTCAAGAACATGA 1218 0.422 MANSSAAAFLDEIPNKKNKESCIINFPFSPALPSHSIFDMIPSPPSQSGDNHHQKASSFVYMDMLTTQDFTTSSTLFEWFPTNDPDLQLPPLPITSPAATSEVLNNPATPVSLSSSISSSSHEAGVANKSVAENEDELGFEGGVEEPDEKNGDHGIRLVENQNDQQDQTQKQVKPARKRKNTKQRPPRITFKTRTDVDHLDDGYRWRKYGQKPVKNSPYPRSYYRCTALGCEVKKRIERSSTEASVVLTSYEGNHTHHSPEKMRAANFGMMHNPSGFQEQIHQHHNITDGVGDGALGNQVAMSRSQQYQQFLDQNQNVRQQQQAVPSLLDYNNSFNTAPPVSVVNSADNFMDSSASFRRLLQNQENYGEHNLVRNNGGLLQDMVVPMEMGGARARAGVGEGTSRT 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04333 405 Gene3D WRKY domain 186 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g04333 405 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 37 385 - -
Tsu04g04333 405 SUPERFAMILY WRKY DNA-binding domain 193 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g04333 405 MobiDBLite consensus disorder prediction 94 127 - -
Tsu04g04333 405 Pfam WRKY DNA -binding domain 201 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g04333 405 ProSiteProfiles WRKY domain profile. 195 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g04333 405 MobiDBLite consensus disorder prediction 88 193 - -
Tsu04g04333 405 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 37 385 IPR044810 GO:0003700
Tsu04g04333 405 SMART WRKY_cls 200 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04333 Tsu-Chr4 51295778 51297598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04333 165 265 WRKY Transcription Factor Family AT4G18170 58.416 1.33e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g04333 WRKY 2.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04333 - - mtr:MTR_4g122530 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04333 04 51295778 51297598 Tsu04g04333 04 51295778 51297598 ECH