Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04326 ATGTCTGGTGATGCATTAGCGTATGTTAATGCAATAAAAGCTGCTGTGTCTAAAGAAAAGTATTCTAAATTTTCACAAGTCATGATGGACTACAGGGCTGGACGAATTGATTCAAGAGGTGTCAAAGCAACGGTCAATGAATTGTTTAAAGGCCATAAACATTTAATTTTGGGAATCAAAAACTTGATGCCAAAGGAATATCAAATCAACATTCCTCCATTAATGGATGATCGGCGACAACAAGAAATAGCAGCGTTTATCATTCAAGTAAATCTTGTGTTCTTAAAGATAACAAGGAAAAATATTCTGAGTTTGAACAAGTCATGA 327 0.3456 MSGDALAYVNAIKAAVSKEKYSKFSQVMMDYRAGRIDSRGVKATVNELFKGHKHLILGIKNLMPKEYQINIPPLMDDRRQQEIAAFIIQVNLVFLKITRKNILSLNKS 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04326 108 ProSiteProfiles PAH domain profile. 1 66 IPR003822 GO:0006355
Tsu04g04326 108 Pfam Paired amphipathic helix repeat 19 57 IPR003822 GO:0006355
Tsu04g04326 108 PANTHER SIN3B-RELATED 3 96 IPR039774 GO:0003714
Tsu04g04326 108 PANTHER PROTEIN, PUTATIVE-RELATED 3 96 - -
Tsu04g04326 108 SUPERFAMILY PAH2 domain 3 67 IPR036600 GO:0006355
Tsu04g04326 108 Gene3D Paired amphipathic helix 4 64 IPR036600 GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04326 2 73 WRKY Transcription Factor Family AT4G12020 43.836 1.09e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu04g04326 PAH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04326 K11644 - mtr:MTR_4g133300 106.686