Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04323 atgatggGAAgtgaagaaagagagaaagtaGTGAAGAAGAAGATCCAAGAGTTAGAAGAAGGACATGCTTTCATGAAACAAGAAATGTCAAAGCTTAAGTTTAATGATGgtaaagaacaacaacaacaacaacaacatcgtCAAAGGTCTCAATCTGTGTCTCCTCAACGTTCTAGATTAGGTTCATGGAACAAAGGTTCTTGTTCTTTCAAACACTCTTCACCTCTCAGAAAGGAAACTCATGCTCATACTCATACACTCATCAATTTCACTGAAAAACATTATCTCAATATTTTGCACTCTTTGGGCCATTCTGTTCATATCTTGGATCTTAACTCTCGTATCATTTATTGGAACCGTAGTGCTGAAAATCTGTATGGTTATGCAGAAGAGGAAGTTTTGGGACAGGATGGGGTTGACTTGCTTGTGGACTCTAGGGATTGGGGGTTAGCTCATGACACAGTGAATTGTGTCATGAATGGAGAAAGATGGAGTGGTCAATTCCTAGTCAAGAATAAGAAAGGAGATAGTTTTTTAGCTGTAACAACCAATACTCCTTTATATGATGATGGAAACTTAGTTGGGATTATCTGTGTGTCGAGTGATTCACGGCCGTTTCTTGAAATGAGGGCTCCATTTTATGGTGTAAAGAATGCTGAATCGAATAATGGTTCTATGCGTCGCAGCAGTAGTGTTGCAGATAAACTTGGCTTTGATTCTCAGCAGCCACTTCAATCTGCTATAGCATCTAAATTTTCGAATTTGGCGTCGAAGATGAGTAACAAAGTTAAGTCGAGAATCTGGACGGGAGAAAATAATGTGGATCATGAAGGTGGGAATGGAGAAGGTTATCATTCTGAACTTGGTTTCTCAGAACACCGAGAAGATGGTAATTCTAGTGAAGCTACCACACCTAGAGGTGATTTGCCACAGTCCCCTCCTGGTGTATTTTATCGTGTTGAAGAAAAGTTTGAAGGAAAACCTTTGAGAGATTCTGGTGATGAGAGTGAAGGAAAACCTGTTCACAAAATTTTACCTACTAAGGCTGAAGCCTGGATTCAAAAGAAAACATTATCGTGGCCATGGAGAACAAATGATCGAGAAGAATCAGAGGCAAGAAATGTTTGTGCTGCTGATCCGTGGAGGCAGAATGATCAAGAAAGTGAGCCAGTTAATCAGAAGAATCATTCGTCCGCCTTGAAGCACGAAAACCAGGCCGGTGAAAGTAATCACAATGAGGCTTCATTATCCCGTTCTTCCTCTTATAATGTTATTCTTAACAGCACGAGTAGTGCTAGCAGCTGTGGGAGTGCTGGCAGTGGTGCTGTAAATAGTAAAGTGGATGCAGACTCTGATTGTTTGGATTATGAAATTTTGTGGGAGGATTTGACGATTCGAGAGCAAATTGGACAGGGTTGTTGTGGAACTGTGTACCATGCTCTGTGGTATGGATCAGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAGTATTCAGATGATTTGATACAGTCCTTCAGGCAAGAGGTATCTGTCATGAAAAGACTTCGACACCCAAATATTCTTCTCTTTATGGGAGCAGTGACTTCACCTCAACGTCTCTGCATTGTGACGGAGTTTCTCCCACGTGGAAGCTTGTGTCGGTTGTTACATAGAAACACGCCCAAACTTGATTGGAGACGGCGAGTTCATATGGCTTTGGATATTGCACGAGGCGTAAATTATCTGCATCATTATAACCCACCTATCATTCATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCACGAAACATATCTCACAACTAAGACAGGAAGGGGAACGCCGCAATGGATGGCACCAGAAGTTCTTCGTAACGAACCGTCGGATGAAAAGTCTGATGTATACAGCTTTGGGGTGATATTATGGGAACTTGCGACTGAAAAGATTCCTTGGGATAATCTCAACGCAATGCAGGTAATTGGAGCTGTAGGGTTCATGAATCAGCGTCCGGAAATTCCAAAAGATGTTGATCCAGGGTGGGCTTCTTTAATTGAGATCTGCTGGCACAGTGATCCAACTTGCCGACCAACTTTCCCGGAACTGCTGGAAAAGCTTAAAGAGTTGCAAAAACAGTATGTCATTCAGTTCCAGGCAGCCCGGTCTGCTGGTGGGGAAAGCATCCAAAGCAAGGAGTCCTAG 2229 0.4105 MMGSEEREKVVKKKIQELEEGHAFMKQEMSKLKFNDGKEQQQQQQHRQRSQSVSPQRSRLGSWNKGSCSFKHSSPLRKETHAHTHTLINFTEKHYLNILHSLGHSVHILDLNSRIIYWNRSAENLYGYAEEEVLGQDGVDLLVDSRDWGLAHDTVNCVMNGERWSGQFLVKNKKGDSFLAVTTNTPLYDDGNLVGIICVSSDSRPFLEMRAPFYGVKNAESNNGSMRRSSSVADKLGFDSQQPLQSAIASKFSNLASKMSNKVKSRIWTGENNVDHEGGNGEGYHSELGFSEHREDGNSSEATTPRGDLPQSPPGVFYRVEEKFEGKPLRDSGDESEGKPVHKILPTKAEAWIQKKTLSWPWRTNDREESEARNVCAADPWRQNDQESEPVNQKNHSSALKHENQAGESNHNEASLSRSSSYNVILNSTSSASSCGSAGSGAVNSKVDADSDCLDYEILWEDLTIREQIGQGCCGTVYHALWYGSDVAVKVFSKQEYSDDLIQSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVHMALDIARGVNYLHHYNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNAMQVIGAVGFMNQRPEIPKDVDPGWASLIEICWHSDPTCRPTFPELLEKLKELQKQYVIQFQAARSAGGESIQSKES 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04323 742 MobiDBLite consensus disorder prediction 364 414 - -
Tsu04g04323 742 SMART serkin_6 463 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04323 742 Gene3D PAS domain 104 205 - -
Tsu04g04323 742 TIGRFAM sensory_box: PAS domain S-box protein 92 202 IPR000014 -
Tsu04g04323 742 ProSiteProfiles PAS repeat profile. 91 162 IPR000014 -
Tsu04g04323 742 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 736 - -
Tsu04g04323 742 SUPERFAMILY Protein kinase-like (PK-like) 453 714 IPR011009 -
Tsu04g04323 742 MobiDBLite consensus disorder prediction 1 65 - -
Tsu04g04323 742 MobiDBLite consensus disorder prediction 385 414 - -
Tsu04g04323 742 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 33 736 - -
Tsu04g04323 742 CDD PAS 106 202 IPR000014 -
Tsu04g04323 742 MobiDBLite consensus disorder prediction 44 65 - -
Tsu04g04323 742 SMART pas_2 93 160 IPR000014 -
Tsu04g04323 742 MobiDBLite consensus disorder prediction 1 43 - -
Tsu04g04323 742 Pfam Protein tyrosine and serine/threonine kinase 463 715 IPR001245 GO:0004672|GO:0006468
Tsu04g04323 742 ProSiteProfiles Protein kinase domain profile. 463 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04323 742 PRINTS Tyrosine kinase catalytic domain signature 537 550 IPR001245 GO:0004672|GO:0006468
Tsu04g04323 742 PRINTS Tyrosine kinase catalytic domain signature 686 708 IPR001245 GO:0004672|GO:0006468
Tsu04g04323 742 PRINTS Tyrosine kinase catalytic domain signature 642 664 IPR001245 GO:0004672|GO:0006468
Tsu04g04323 742 PRINTS Tyrosine kinase catalytic domain signature 576 594 IPR001245 GO:0004672|GO:0006468
Tsu04g04323 742 PRINTS Tyrosine kinase catalytic domain signature 623 633 IPR001245 GO:0004672|GO:0006468
Tsu04g04323 742 MobiDBLite consensus disorder prediction 278 301 - -
Tsu04g04323 742 Pfam PAS fold 94 200 IPR013767 GO:0006355
Tsu04g04323 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Tsu04g04323 742 Gene3D Transferase(Phosphotransferase) domain 1 542 729 - -
Tsu04g04323 742 Gene3D Phosphorylase Kinase; domain 1 456 540 - -
Tsu04g04323 742 MobiDBLite consensus disorder prediction 270 315 - -
Tsu04g04323 742 Coils Coil 15 35 - -
Tsu04g04323 742 CDD STKc_MAP3K-like 469 715 - -
Tsu04g04323 742 SUPERFAMILY PYP-like sensor domain (PAS domain) 91 202 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04323 Tsu-Chr4 51204051 51210049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04323 13 732 MAP Kinase Kinase Kinase AT3G06620 56.414 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Tsu04g04323 PK_Tyr_Ser-Thr 1.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04323 - - gmx:100800867 1074.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04323 04 51204051 51210049 Tsu04g04323 04 51204051 51210049 ECH