Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04295 ATGGCAAATATCTTATCTGGTCAACTAGTTGGATCAGAGATACATGGATTCCACACATTGCAAGAGCTGGATGTTGCGAGCATTATGGAGGAAGCAAGAACAAGATGGCTTCGTCCCAATGAGATTCATGCCATGCTTTGTAATCACAAGTATTTCACCATCAATGTCAAGCCAATGAATTTGCCCAAAAGTGGCACTATTGTATTATTTGACCGCAAAAAGCTTCGGAACTTTAGAAAAGATGGGCACAactggaaaaagaaaaaggatggAAAAACTGTTAAAGAAGCTCACGAGCACTTAAAAGTTGGTAATGAAGAAAGGATTCATGTATATTATGCACATGGTCAAGATAACCCAAAATTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTTTGGAACACATTGTCCTAGTTCATTACCGTGAAACACAAGAGTCTCAAGGTTCTCCCATGACCCCCGTACATTCAAACTCTACTACTGCCTCTGACCCCACTGCACCGTGGATTTTGTCAGAAGAAATAGATtcggggaccaaaactgcatatACTGGTGAGATTAATGACAATACAACAGTCAAAAGTCATGAACTGAGGCTTCATGAACTTAATACACTTGAATGGGATGACCTAGTGATTGCAAACGATCTTAACACCTCTACTGTACCTAATGGAGGAAAACTTCCATATTTTGATCAACAAAACCAAATTTCACCGAATGGCAGTTTTAGCAATGTAGCCAGCAATGCAGCTGTGGGAATTAATTCTTTCGATAATTCAACTCAGCCAAATGCAGCGAGCAATAGTGTTCCATACAATTTTTCAGGTGTTACTCTTCAGACAATTTACAATCAAGGAAATCAAAATGCCCAGAATAATCATCATGTATCTTCAAGTGGTGTTGATTCGTTAAACACTTTGGTCAATGACAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCAAATCATGTCTGATTCCCCTTGTTCAGTTGATGATTCTGCTCTGGGATCCTCAGTTACACCCGTTAATGAACCATATTCATCTCTGGATGTCGATAATCAGCAACTTTCCCTTCCAGAACAAGTATTTAATCTCACCGATGTGTCCCCTGTGTGGGTGTCTTCCACAGAGAAATCAAAGATTTTAGTGACTGGACTCTTTCATAAAGACTACTTGCACCTCCCAAAGTCCAATCTAATGTGTGTTTGTGGTGATACAAGTGTTCCTTTAGAAATTGTTCAGGATGGAGTTTACCGATGTTGGGTACCACCACATTCTCCGGGATTCGTGAATCTCTACTTGAGCTTTGATGGTCATAATCCTATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTGTTTTGCACGACCCAGTTGCTTCTGTGGAAGAGAAGAACTGGGATGAGTTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAGCAGAGTCTTGATGTCATCTCTAGTAAAGTATCACCTACTAGACTAAAGGAGGCAAGAGAATTCTCCTTAAAGACATCCTTTATTTCTAATACTTGGCAATACTTATTGAAATCAACTTTAGACAACACAATTCCATTTTCACAAGCAAAAGATGCACTGTTCGGAATTGCATTGAAAAACAGATTAAAGGAATGGCTTtcagaaaaaattgttttaggATATAAGACTACTGAATATGACGCACAAGGCCAAAGTGTCATCCATTTGTGTGCAATTTTGGAATATACATGGGCCGTTACTTTATTTTCATGGTCAGGCTTGTCGCTAGATTTTCGGGATAAATTTGGATGGACTGCTCTTCATTGGGCAGCATATTACGGCAGGGAGAAAATGGTTGCAACTTTATTGTCAGCTGGAGCAAAGCCAAATTTGGTCACAGATCCAACTCAGCAAAACCCTGGTGGATGTACTGCCGCTGATCTTGCTTATACAAGGGGTTATCATGGATTAGCAGCTTATCTTTCGGAAAAGTCTTTAGTTGAGCAATTCAATGACATGAGCTTAGCGGGAAATATCAGTGGCTCACTGGAAACTAGCACGGATGATCCAGTAAATTCCGAGAACCTTACCGAGGAACAGCTTTACCTTAAAGATACATTGGCAGCTTACCGTACAGCCGCCGATGCAGCAGCACGCATACAAGAAGCATATAGGCAGCATTCCTTAAAGTTACAAACTGAGGCGGTTGAGTTTTCCAATCCGGAAGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTCCGCAATTTTGAAACAAAGAAAGTGATGGCTGCTGCTGCTCGCATACAACATAGATTCCGTTCATGGAAGATTCGTAGAAATTTTCTCAACATGCGCCGTCAGGCTATCAAGATTCAAGCTGCTTTCAGGTCCTTTCAACAACGGAAACATTATTGTAAAATCCTTTGGTCAGTTAGTGTGGTTGAGAAAGCAGTGTTGCGTTGGCGTTTAAAGAGAAAGGGCTTCCGCGGGCTCCAGCTTAATACTGAGGAAGCAGATGGAGATCAGAATCAGCAAAGTGATGCAGAGGAAGATTTCTTTCGTACTAGTAGGAAACAAGCTGAAGAACGTGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGATTACAGGAGGATGAAGTTGGCCCTTGATCAAGCAAAGCTGGAACGGGAATATGAAAAAGTGCTTAGTAATGAAGTTGACATGGAAAAGAAGACCCAGTTTAGCCGAAGATATTAG 2781 0.4009 MANILSGQLVGSEIHGFHTLQELDVASIMEEARTRWLRPNEIHAMLCNHKYFTINVKPMNLPKSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPKFVRRCYWLLDKSLEHIVLVHYRETQESQGSPMTPVHSNSTTASDPTAPWILSEEIDSGTKTAYTGEINDNTTVKSHELRLHELNTLEWDDLVIANDLNTSTVPNGGKLPYFDQQNQISPNGSFSNVASNAAVGINSFDNSTQPNAASNSVPYNFSGVTLQTIYNQGNQNAQNNHHVSSSGVDSLNTLVNDRLQSQDSFGMWVNQIMSDSPCSVDDSALGSSVTPVNEPYSSLDVDNQQLSLPEQVFNLTDVSPVWVSSTEKSKILVTGLFHKDYLHLPKSNLMCVCGDTSVPLEIVQDGVYRCWVPPHSPGFVNLYLSFDGHNPISQVVNFEYRTPVLHDPVASVEEKNWDEFRLQMRLAYLLFAKQQSLDVISSKVSPTRLKEAREFSLKTSFISNTWQYLLKSTLDNTIPFSQAKDALFGIALKNRLKEWLSEKIVLGYKTTEYDAQGQSVIHLCAILEYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTQQNPGGCTAADLAYTRGYHGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTDDPVNSENLTEEQLYLKDTLAAYRTAADAAARIQEAYRQHSLKLQTEAVEFSNPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQHRFRSWKIRRNFLNMRRQAIKIQAAFRSFQQRKHYCKILWSVSVVEKAVLRWRLKRKGFRGLQLNTEEADGDQNQQSDAEEDFFRTSRKQAEERVERSVIRVQAMFRSKKAQEDYRRMKLALDQAKLEREYEKVLSNEVDMEKKTQFSRRY 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04295 926 Gene3D - 535 672 IPR036770 -
Tsu04g04295 926 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Tsu04g04295 926 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 919 - -
Tsu04g04295 926 ProSiteProfiles IQ motif profile. 790 818 IPR000048 GO:0005515
Tsu04g04295 926 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Tsu04g04295 926 SMART CG_1_2 28 146 IPR005559 GO:0003677
Tsu04g04295 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 818 IPR027417 -
Tsu04g04295 926 SMART iq_5 869 891 IPR000048 GO:0005515
Tsu04g04295 926 SMART iq_5 766 788 IPR000048 GO:0005515
Tsu04g04295 926 SMART iq_5 789 811 IPR000048 GO:0005515
Tsu04g04295 926 MobiDBLite consensus disorder prediction 148 167 - -
Tsu04g04295 926 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Tsu04g04295 926 ProSiteProfiles IQ motif profile. 768 796 IPR000048 GO:0005515
Tsu04g04295 926 Pfam IPT/TIG domain 369 454 IPR002909 -
Tsu04g04295 926 ProSiteProfiles Ankyrin repeat region circular profile. 603 631 - -
Tsu04g04295 926 Gene3D Immunoglobulins 363 458 IPR013783 -
Tsu04g04295 926 SUPERFAMILY Ankyrin repeat 545 665 IPR036770 -
Tsu04g04295 926 ProSiteProfiles IQ motif profile. 871 899 IPR000048 GO:0005515
Tsu04g04295 926 SUPERFAMILY E set domains 368 455 IPR014756 -
Tsu04g04295 926 Pfam IQ calmodulin-binding motif 792 810 IPR000048 GO:0005515
Tsu04g04295 926 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 919 - -
Tsu04g04295 926 Gene3D - 764 814 - -
Tsu04g04295 926 SMART ANK_2a 603 632 IPR002110 GO:0005515
Tsu04g04295 926 SMART ANK_2a 642 673 IPR002110 GO:0005515
Tsu04g04295 926 Coils Coil 883 919 - -
Tsu04g04295 926 Pfam Ankyrin repeats (3 copies) 565 632 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04295 Tsu-Chr4 51040669 51048956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04295 28 903 CAMTA Transcription Factor Family AT3G16940 55.455 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Tsu04g04295 Ank_2 8.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04295 K21596 - gmx:100793970 1482.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04295 04 51040669 51048956 Tsu04g04295 04 51040669 51048956 ECH
Tsu04g04295 04 51040669 51048956 Tsu07g01760 07 17361874 17369546 PCT