Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04289 ATGGGAAGAGCTCCTTGTTGTGAGAAGATTGGTTTGAAGAAAGGAAGATGGACTGCTGAAGAAGATAAGATCTTAACTGATTATATTCAAGAAAATGGTGAAGGATCATGGAGATCTTTGCCAAAGAATGCAGGTTTGTTGAGATGTGGAAAGAGTTGTAGACTGAGATGGATAAACTACTTGAGATCAGATGTGAAGAGAGGTAACATCACTCCTCAGGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCTGTAATAGCAGGACATTTACCAGGACGTACAGATAATGAGATAAAAAACTATTGGAACTCTCATTTAAGGAGAAAAATTTACTGCTTCATGAAGTCATTAAATGAATCACTTCCACCAATTGACATAGCTGCTGTTAACCTAGCTGCTTCTAACAGAAGAAGAGCTAGTAGAACAGCTCATCATGCACCAAAGCAAGACCAAAACAACAAAGATCAGTTACTTCTTCAAGTTCAACTACCAACACTACATAAAAGAAAACCAAATGCTGCTAATGGAGAAGAGGAGCTTCAACAAGGTTATAATACTACAACTAATTCATCATGTCCTAACATGAATGAATTAGTTGACCCTTTGGAACCATTTGAATGGTTAGATGATGAAATTATTAAACTAAGTTACATGTTTGAAAGTGGAATACTTGTTAGTCCAGAACAtgagattaataataataataataatgttaatgTAACTAGTGATGATAATACTCTAGATCCTAATTATGGAGTATTAATGGGAAAtaatgatggtggtggtggtggtgtttgGAGTTCATCAAATGGTGCTGAAAGTGGAGAatggaataataataataataacactaCTAGTTGTAATTCATCTGTGAATTCTGTTTATGAATATCAGTGGCCTGATATGCATTTAGAAGGTAGTAGTGTTCAATCCTACAATCAACAATGGGACATTTGTGATCAACAAGGTCAAGATGTTAATGGCTTCTGGGGTACTTCCAATTATCAAGATAATAGCTTTTATCATTGA 1047 0.3333 MGRAPCCEKIGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDIAAVNLAASNRRRASRTAHHAPKQDQNNKDQLLLQVQLPTLHKRKPNAANGEEELQQGYNTTTNSSCPNMNELVDPLEPFEWLDDEIIKLSYMFESGILVSPEHEINNNNNNVNVTSDDNTLDPNYGVLMGNNDGGGGGVWSSSNGAESGEWNNNNNNTTSCNSSVNSVYEYQWPDMHLEGSSVQSYNQQWDICDQQGQDVNGFWGTSNYQDNSFYH 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04289 348 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu04g04289 348 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu04g04289 348 Gene3D - 71 116 - -
Tsu04g04289 348 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu04g04289 348 CDD SANT 16 61 IPR001005 -
Tsu04g04289 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu04g04289 348 SMART sant 13 63 IPR001005 -
Tsu04g04289 348 SMART sant 66 114 IPR001005 -
Tsu04g04289 348 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu04g04289 348 PANTHER MYB TRANSCRIPTION FACTOR 2 299 - -
Tsu04g04289 348 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu04g04289 348 CDD SANT 71 112 IPR001005 -
Tsu04g04289 348 Gene3D - 13 66 - -
Tsu04g04289 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu04g04289 348 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04289 Tsu-Chr4 50999750 51002433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04289 1 256 MYB Transcription Factor Family AT5G49330 50.385 6.84e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g04289 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04289 K09422 - gmx:100805532 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04289 04 50999750 51002433 Tsu04g04289 04 50999750 51002433 ECH