Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04288 ATGACGCTTCGACCAAATGACAAGCCTAATCCTCGCCGCCGCTACAAGACCGCCGTCCACGCTGAAGATTGTCGCCGGAGACGTGAAGACGACATGATTGAGATTCGCAAGAACAAGCGTGAAGAGAGCTTGCAGAAGAAGCGTCGCGAAGGTGAAGCATCATCCCAGTTTCCCACTGTCGAACATAATGAGATAGATAGTCTTACTGCAATGGTTGCTGGTGTCCGTTCCAACGATGCTAGTGCGCAACTGGAAGCCACCAAGAAGTTTAGGACTATACTTTCAAGAGATCGGAACCCGCCTATTGATGAGGTTGTTGAATCTGGTGTTGTGCCACGTTTTGTTGAGTTTCTTGTTAGGGAGGACATGCCTCAACTTCAGTTTGAAGCTGCATGGGCTCTGACAAACATAGCATCCGGAACTTCTGAGAATACTAAGACTGTGATTGATCATGGAGCAGTTCCTCTGTTTGTTACATTGCTTAGTTCACCTAGTAATGATGTTCGTGATCAGGCAGTGTGGGCTTTGGGAAATATTGCTGGTGACTCCCCTAAATACCGTGATCTAGTGCTTAACCATGGTGCCCTTGTCTCACTATTGGCCCAATTGAATGAGTACACCGGACTTTCAATGTTGAGAAATTCCACATGGACTTTATCAAACTTCTGCAGGGGAAAGCCACAGCCTGCATTTGAGCTGGTGAGACCTGCACTTCCAGCTCTACAGCGTTTGATTTTGTGCGATGATTCAGAAGTTTTGACAGATGCTTGTTGGGCTTTAGCATACCTTTCTGATGGCACAAATGACAAAATCAATGAAATTATTGAGGCGGGTGTATGCGGCCAACTGGTGCAAATCCTTCAACATCCATCTCCTTCAGTGTTGATCCCTGCTGTTCGTACGGTGGGAAATATTGTGACCGGAGATGATGTGCAGACTCAGGTGATGATCAATCATGGTGTGCTCCCCTGCCTTTTGAGCTTATTGACACACATTCAGAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACTATATCAAACATTACAGCTGGAACTACGGAACAAATACAGGCTGTTATTGAAGCTGGTCTTATTGCTCCGCTTGTTAGTCTTCTTCAAAATGCAGAGTTTGAGATTAAAAAAGAAGCTGCATGGGCAATATCAAATGCCACATCTGGTGGAATTCATGAGCAGATCAAGTATTTGGTGGGTCAGGGTTGCATAAAACCACTATGTGATCTGCTTGTTTGCCCCGATCCAAGAATTGTCACTGTCTGTTTAGAGGCCCTAGAGAATATTCTGAATGTTGGAGAAGCAGAGAAGAGCATGGGTAACTCCGGAGATTTCAACTTATATGCTCAGATGATAGAGGATTCAGAGGGATTGGAGAAGATTGAAAACCTGCAGAATCATGACAACAATGAAATATATGAGAGGGCTGTTAAACTTCTTGAAACATTCTGGTTGGAAGAAGATGAGACGATACTACCTTCAGGCGATGATGATCAATCTGGTTTCATGGCTTCAGTCCCATCTGGTGGATTCAACTTCAACTGA 1557 0.4457 MTLRPNDKPNPRRRYKTAVHAEDCRRRREDDMIEIRKNKREESLQKKRREGEASSQFPTVEHNEIDSLTAMVAGVRSNDASAQLEATKKFRTILSRDRNPPIDEVVESGVVPRFVEFLVREDMPQLQFEAAWALTNIASGTSENTKTVIDHGAVPLFVTLLSSPSNDVRDQAVWALGNIAGDSPKYRDLVLNHGALVSLLAQLNEYTGLSMLRNSTWTLSNFCRGKPQPAFELVRPALPALQRLILCDDSEVLTDACWALAYLSDGTNDKINEIIEAGVCGQLVQILQHPSPSVLIPAVRTVGNIVTGDDVQTQVMINHGVLPCLLSLLTHIQKKSIKKEACWTISNITAGTTEQIQAVIEAGLIAPLVSLLQNAEFEIKKEAAWAISNATSGGIHEQIKYLVGQGCIKPLCDLLVCPDPRIVTVCLEALENILNVGEAEKSMGNSGDFNLYAQMIEDSEGLEKIENLQNHDNNEIYERAVKLLETFWLEEDETILPSGDDDQSGFMASVPSGGFNFN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04288 518 Pfam Importin beta binding domain 12 87 IPR002652 GO:0006606|GO:0061608
Tsu04g04288 518 Gene3D - 66 489 IPR011989 -
Tsu04g04288 518 MobiDBLite consensus disorder prediction 1 62 - -
Tsu04g04288 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 109 152 IPR000225 GO:0005515
Tsu04g04288 518 PIRSF Importin_alpha 2 517 IPR024931 GO:0005737|GO:0006606|GO:0061608
Tsu04g04288 518 Pfam Armadillo/beta-catenin-like repeat 99 139 IPR000225 GO:0005515
Tsu04g04288 518 Pfam Armadillo/beta-catenin-like repeat 268 306 IPR000225 GO:0005515
Tsu04g04288 518 Pfam Armadillo/beta-catenin-like repeat 183 224 IPR000225 GO:0005515
Tsu04g04288 518 Pfam Armadillo/beta-catenin-like repeat 141 180 IPR000225 GO:0005515
Tsu04g04288 518 Pfam Armadillo/beta-catenin-like repeat 309 350 IPR000225 GO:0005515
Tsu04g04288 518 Pfam Armadillo/beta-catenin-like repeat 353 391 IPR000225 GO:0005515
Tsu04g04288 518 Pfam Armadillo/beta-catenin-like repeat 233 264 IPR000225 GO:0005515
Tsu04g04288 518 Pfam Armadillo/beta-catenin-like repeat 397 433 IPR000225 GO:0005515
Tsu04g04288 518 SMART arm_5 267 307 IPR000225 GO:0005515
Tsu04g04288 518 SMART arm_5 183 224 IPR000225 GO:0005515
Tsu04g04288 518 SMART arm_5 226 265 IPR000225 GO:0005515
Tsu04g04288 518 SMART arm_5 98 139 IPR000225 GO:0005515
Tsu04g04288 518 SMART arm_5 395 435 IPR000225 GO:0005515
Tsu04g04288 518 SMART arm_5 309 350 IPR000225 GO:0005515
Tsu04g04288 518 SMART arm_5 352 392 IPR000225 GO:0005515
Tsu04g04288 518 SMART arm_5 141 181 IPR000225 GO:0005515
Tsu04g04288 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 363 IPR000225 GO:0005515
Tsu04g04288 518 MobiDBLite consensus disorder prediction 1 55 - -
Tsu04g04288 518 PANTHER IMPORTIN SUBUNIT ALPHA 2 503 - -
Tsu04g04288 518 Pfam Atypical Arm repeat 450 494 IPR032413 -
Tsu04g04288 518 SUPERFAMILY ARM repeat 12 491 IPR016024 -
Tsu04g04288 518 ProSiteProfiles IBB domain profile. 1 57 IPR002652 GO:0006606|GO:0061608
Tsu04g04288 518 PANTHER IMPORTIN ALPHA 2 503 - -
Tsu04g04288 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 391 IPR000225 GO:0005515
Tsu04g04288 518 Gene3D - 11 49 IPR036975 GO:0006606
Tsu04g04288 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 194 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04288 Tsu-Chr4 50993378 50996949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04288 134 383 U-box Gene Family AT1G23030 20.400 2.40e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04288 K15042 - gmx:100780020 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04288 04 50993378 50996949 Tsu04g04288 04 50993378 50996949 ECH
Tsu04g04288 04 50993378 50996949 Tsu01g03550 01 43446616 43450553 ECH
Tsu04g04288 04 50993378 50996949 Tsu07g01781 07 17577364 17581006 PCT