Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04287 ATGGTGGTTGATCAAAGTGGAAAGGGATCAGAAGGTGAAGATTCAAACCCTAACACCACCGTTTCATCTGAGAACAGTCCAAAGAAAACATGTGCTGATTGCGGAACTTCCAAAACTCCTCTATGGCGTGGTGGACCTGCAGGACCAAAGTCTCTGTGTAATGCTTGCGGGATCAGGAgcaggaagaagaagagagcgaTTTTGGGAATAAGCAAAGGAAACAACGAAGAAGGAACAAAAAAGGGGAGAAAGAGTAACGGTAGTGGTGGAAGCAAAGTTGGGGATAATTTGAACATGAAACAGAGATTATTTAATTTAGGGAAAGAAGTGTTTATGCAGAGATCGCATTGGAAGAAATTGGGAGAAGAAGAACAAGCTGCTGTGTTATTGATGTCTTTATCTTATGGATCTGCTGTTTATGCCTAA 426 0.3944 MVVDQSGKGSEGEDSNPNTTVSSENSPKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEEGTKKGRKSNGSGGSKVGDNLNMKQRLFNLGKEVFMQRSHWKKLGEEEQAAVLLMSLSYGSAVYA 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04287 141 SMART GATA_3 25 84 IPR000679 GO:0006355|GO:0043565
Tsu04g04287 141 ProSitePatterns GATA-type zinc finger domain. 31 56 IPR000679 GO:0006355|GO:0043565
Tsu04g04287 141 MobiDBLite consensus disorder prediction 9 33 - -
Tsu04g04287 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 25 65 - -
Tsu04g04287 141 ProSiteProfiles GATA-type zinc finger domain profile. 25 61 IPR000679 GO:0006355|GO:0043565
Tsu04g04287 141 CDD ZnF_GATA 30 84 IPR000679 GO:0006355|GO:0043565
Tsu04g04287 141 PANTHER OS01G0976800 PROTEIN 3 140 - -
Tsu04g04287 141 MobiDBLite consensus disorder prediction 1 49 - -
Tsu04g04287 141 Gene3D - 26 91 IPR013088 GO:0006355|GO:0008270
Tsu04g04287 141 MobiDBLite consensus disorder prediction 66 96 - -
Tsu04g04287 141 Pfam GATA zinc finger 31 65 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04287 Tsu-Chr4 50987133 50988203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04287 18 141 C2C2-Gata Transcription Factor Family AT3G06740 59.690 6.26e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu04g04287 GATA 1.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04287 - - aprc:113847917 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04287 04 50987133 50988203 Tsu04g04287 04 50987133 50988203 ECH
Tsu04g04287 04 50987133 50988203 Tsu07g04419 07 49329542 49331050 ECH