Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04285 ATGATATCGCGATTCATCATCGTCGTTTTAGCAACAATCTTACTTTCAACGACGTCGTTTACAGACGCACAATCCTGCAACGGTATACTCATTTCCTACTCCTCCGGTACCGGAATACGTCTTCCTCCGAACGTCACCGACCCAAAGAAACAACCATACCGATTCGAATCCACGTTGACTGTACTCAACAACGGTCTCGATGAGCTCAAGTCATGGAAAGTCTTCGTTGGATTTCAGCACAACGAGTTTCTAGTTTCCGCTTCAAATGCAGTGATCGCTGACGGTACTACCCTCCCCGCCGCCGTTGGAAACGGAACTGTTTTGGCTGGATTTCCTATGACTGATTTGAAGACTGCTGTTGAAACTGCTGGTGATTTGACTCAGATGCAGACTCAGATCAAACTCGTCGGTACTGTTTTTGGGGTTGCGCCGCCGACTGTTCCGTTGCCGTCTTCCATCAATCTCGCTAATGATGGATTCATTTGTGGGAAAACCACCGGTCAAGGGAAGAATGGGACTAATGTGTGTTGCACAAGAGATCCAAAGTTCAAAACAAACATAACGACAGATGAAAAGTTTCTGCCTCGTCAGAATGGCGATCTTACTATTATGTATGATGTGATCAGATCTTATGATTCAAATTACTGGGCAGAGGTTGCTATTACTAACCATAATTCTCTTGGAAGGCTTGATAATTGGAGGTTGAGTTGGGATTGGATGAATGATGAGTTTATATTTGCAATGAAAGGTGCTTATCCATCTGTTGTGGATTCTTCTGATTGTATCTTTGGTAAGCAAGGTACATTTTACAAGGAACTTGATTTTGCTACTGTATTGAATTGTGAGAGGAGGCCTACCATTATTGATCTTCCTCCTACTAAGTTCAACGACACTGATATTGGGAAAATTCCTTCTTGTTGCCGGAATGGTACTATATTGCCACCATCTATGGATCCAAGTAAATCTGTTTCGAGATTCCAAATGCAAGTGTTCAAAATGCCGCCGGTGCTTAACAGGTCCGAGCTTTCACCGCCGCAAAACTGGAAGATTAGTGGATCGCTTAACCCCGACTACAAATGCGGTCCTCCGGTTCGTGTTAGTCCTACTGAGTCTCCAGATTCTAGCGGGTTGCCTTTAAACAGAACTGTAATGGCAAGTTGGCAGGTTGTGTGTAACATAACAACAGCCAAGGGAACGCCAAATAAATGCTGTGTCTCATTTTCAGCTTATTATAATGAATCAGTTATTCCATGCAAAACATGTGCATGTGGATGTCCAAATAATGTGGCAAGAACATGTAGTACTACTGCACCTGCTATGTGGCTTCCCTCACAGGCACTCCTTGTTCCTTTCGAGAACCGAACTGCTCAGGCTGTTGCTTGGGCTAGTCTGAAACATCTACCAGTGCCACAACCAATGCCCTGCAGTGATAATTGTGGTGTGAGCATCAATTGGCATCTACTTACAGATTATAATAAAGGATGGAGTGCAAGGGTCACACTTTTCAATTGGGGTGAGACTAATTTTGCTGACTGGTTTGCTGCTGTGCAAATGGACAAAGCTACTGCAGGTTTTGAGAAAATGTATTCATTCAATGCAAGTGCCATAGAGATAGATGGGGTGAATAATACGATAATAATGCAAGGTTTGGAGGGATTGAACTACCTTGTTGGAGAAACAGATGGAGCTGACCCTCGGAGAGATCCTAGAGTGCCTGGCAAACAACAGTCAGTAATCTCATTCACAAAGAAAACTACTCCTGGAATCAGTATCGTTCGTGGTGACGGGTTCCCCACTAAAGTTTTCTTCAATGGGGAAGAATGCTCTCTTCCTTCTGTACTTCCAACCAGTAGTGCTTCCAGGAAGGGATTTTCCTATGCTACTTTGATGCTTCTACCATTGTTGCTATTTGTCTTCATGTTGTAA 1926 0.4361 MISRFIIVVLATILLSTTSFTDAQSCNGILISYSSGTGIRLPPNVTDPKKQPYRFESTLTVLNNGLDELKSWKVFVGFQHNEFLVSASNAVIADGTTLPAAVGNGTVLAGFPMTDLKTAVETAGDLTQMQTQIKLVGTVFGVAPPTVPLPSSINLANDGFICGKTTGQGKNGTNVCCTRDPKFKTNITTDEKFLPRQNGDLTIMYDVIRSYDSNYWAEVAITNHNSLGRLDNWRLSWDWMNDEFIFAMKGAYPSVVDSSDCIFGKQGTFYKELDFATVLNCERRPTIIDLPPTKFNDTDIGKIPSCCRNGTILPPSMDPSKSVSRFQMQVFKMPPVLNRSELSPPQNWKISGSLNPDYKCGPPVRVSPTESPDSSGLPLNRTVMASWQVVCNITTAKGTPNKCCVSFSAYYNESVIPCKTCACGCPNNVARTCSTTAPAMWLPSQALLVPFENRTAQAVAWASLKHLPVPQPMPCSDNCGVSINWHLLTDYNKGWSARVTLFNWGETNFADWFAAVQMDKATAGFEKMYSFNASAIEIDGVNNTIIMQGLEGLNYLVGETDGADPRRDPRVPGKQQSVISFTKKTTPGISIVRGDGFPTKVFFNGEECSLPSVLPTSSASRKGFSYATLMLLPLLLFVFML 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04285 641 Pfam COBRA-like protein 215 394 IPR006918 GO:0010215|GO:0031225
Tsu04g04285 641 PANTHER COBRA-LIKE PROTEIN 7 6 639 - -
Tsu04g04285 641 PANTHER COBRA-LIKE PROTEIN 7 6 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04285 Tsu-Chr4 50965391 50968026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04285 26 625 COBRA Gene Family AT4G16120 67.442 0.0 864
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04285 - - gmx:100814396 1112.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04285 04 50965391 50968026 Tsu04g04285 04 50965391 50968026 ECH
Tsu04g04285 04 50965391 50968026 Tsu07g01783 07 17614295 17616413 PCT