Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04284 ATGAATCTTAGCAACGGTAAAGGATCCATTTCTACCGTTACTTCAACTGCTACTATGAAATCCGGTGAAGGTTCCGACCAGTTTCCGGCTGGTTTACGAGttcttgttgttgatgatgatccCACGTGCCTTATGATCCTTGAGAAGATGTTACGCACGTGTCTTTATGAAGTTACGAAATGCAATCGAGCTGAGACGGCACTTTCACTCTTAAGAGAGAACAAGAATGGATTTGACATTGTTATCAGTGATGTTCATATGCCTGACATGGATGGATTTAAACTCTTAGAACATATTGGATTGGAAATGGATCTTCCGGTTATTATGATGTCTGCGGATGACGGTAAAAGTGTTGTTATGAAGGGTGTAACACATGGTGCTTGCGATTATCTAATTAAACCTGTTCGTATCGAGGCTTTGAAGAACATATGGCAACATGTGGTTAGGAAGAAAAAGAATGAGTGGAAAGATACAGAGCAATCGGGTAGCGCTGATGAAGGAGATCGACATCCAAAGGCATCTGATGATGCTGATTATTCGTCTTCTGCTAATGAAGGTAATTGGAGAAACTCGAGAAAGAGAAGGGACGATGAAGAGGATGGTGATGATAGAGATGACTCGTCAACACTAAAGAAGCCTCGTGTTGTTTGGTCTGTGGAACTCCATCAACAGTTTGTGGCTGCTGTCGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGCCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGaaATATCGGTTGTATCTTCGAAGACTGAGCGGAGTTTCTCAGCACAATAACTTGAACAACTCATTTCTCAGCCCACAAGAGGCATCATTTGGTACGATTTCACCAATGAACGGTCTTGATCTTCATACTCTTGCAGCTGCTGGCCAGCTCCCAGCACAAAGTTTAGCCACTCTTCAAGCCGCAGGACTTGGTAGGTCAACTGTGAAACCAGGCTTATCAATGCCTCTCATGGATCAAAGAAACCTTTTTAGTTTTGAAAACCCGAGGTTGAGATTTGGAGAAGGACAACAACAACTTTTGAGCAGCAGTAAACCAACAAATCTTCTTCATGGAGTTCCTACTAACATGGAGCCAAAGCAGCTTGCGAATTTGCACCAATCTGCACAATCCCTCGGCAATTTGAATATGCGAGTCACTGGTTCTGCTACACAGGGTAATCCGTTATTGATGCAGATGACACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATACCAGTCCTCGTGTTCCGAGACTTCCTAACATCTTGGGGCAGCCTACTTTGTCAAACGGAATTTCTGATGGTCTTTTGGGGAGAAATGGCATAGCTAGTAGCAGCAGAACGCCTTCGTTTAATCCTGTTTCACAGAGCTCATCATATTTGAATTTTCCCATGAATCAAAGCACTGAAATGTCTGTTAGTAATTTCCCTCTCGGAAGCACTCCAGGTATGTCTAGTATGACAACCAAAGGCTCGTTTCAACCGGAAGTTAATTCGGGAATTAGAGCATCTGCTGGTTTTCCAAACTATGATATTTTTAATGACCTGCACCAGCAGAAGTCCCGGGATTGGGGGATGGCAAGCCAAGGTCCAATGTATGATTCATCATCACAAGCAAATCCTTTGCATGGTAACATCGACGTCTCTCCATCAGTTTTAGTCCAGCAGGGTTATTCTTCtactcaacaacaacaacctggACATAGCAGAGATATCTCTTTGATTGGAAAATCTCCTTTCTCTCTCGGAGAAGGCTTGGAACACAGTAATCTCCAAAATGGTGGTCAACACTTCAATCCCCTTATCGCTGACAGTTCAACAAGGGTCAAATCTGAAAGAGTTCCTGACGCGAGCTCCCAGACTAACCTCTTCCCTGATCATTACGGGCAGGAGGATCTCATGAGTGCACTTCTGAAACAGCAGGAAATTGGACAAGGCGAGAATGACTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTCTAG 2034 0.4267 MNLSNGKGSISTVTSTATMKSGEGSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSADEGDRHPKASDDADYSSSANEGNWRNSRKRRDDEEDGDDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHNNLNNSFLSPQEASFGTISPMNGLDLHTLAAAGQLPAQSLATLQAAGLGRSTVKPGLSMPLMDQRNLFSFENPRLRFGEGQQQLLSSSKPTNLLHGVPTNMEPKQLANLHQSAQSLGNLNMRVTGSATQGNPLLMQMTQSQPRGQMLSENTSPRVPRLPNILGQPTLSNGISDGLLGRNGIASSSRTPSFNPVSQSSSYLNFPMNQSTEMSVSNFPLGSTPGMSSMTTKGSFQPEVNSGIRASAGFPNYDIFNDLHQQKSRDWGMASQGPMYDSSSQANPLHGNIDVSPSVLVQQGYSSTQQQQPGHSRDISLIGKSPFSLGEGLEHSNLQNGGQHFNPLIADSSTRVKSERVPDASSQTNLFPDHYGQEDLMSALLKQQEIGQGENDFDFDGYSLDNIPV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04284 677 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Tsu04g04284 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 650 IPR045279 GO:0009736
Tsu04g04284 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 268 IPR017930 -
Tsu04g04284 677 SMART REC_2 32 144 IPR001789 GO:0000160
Tsu04g04284 677 Gene3D - 32 199 - -
Tsu04g04284 677 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Tsu04g04284 677 PIRSF RR_ARR_type-B 14 669 IPR017053 GO:0003677|GO:0003700|GO:0009736
Tsu04g04284 677 Gene3D - 209 271 - -
Tsu04g04284 677 MobiDBLite consensus disorder prediction 152 176 - -
Tsu04g04284 677 MobiDBLite consensus disorder prediction 1 23 - -
Tsu04g04284 677 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Tsu04g04284 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 650 - -
Tsu04g04284 677 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Tsu04g04284 677 MobiDBLite consensus disorder prediction 152 209 - -
Tsu04g04284 677 CDD REC_typeB_ARR-like 34 148 - -
Tsu04g04284 677 MobiDBLite consensus disorder prediction 188 209 - -
Tsu04g04284 677 MobiDBLite consensus disorder prediction 540 559 - -
Tsu04g04284 677 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Tsu04g04284 677 SUPERFAMILY CheY-like 31 153 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04284 Tsu-Chr4 50958833 50963471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04284 67 677 Response Regulator Gene Family AT3G16857 50.306 1.56e-180 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu04g04284 Response_reg 6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04284 - K14491 gmx:100814930 1090.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04284 04 50958833 50963471 Tsu04g04284 04 50958833 50963471 ECH
Tsu04g04284 04 50958833 50963471 Tsu07g01784 07 17616507 17619762 PCT