Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04276 ATGCTAGTGGCATTGTTCTTGATGCTGCTGGCATTGAACAGTGAAGTGAGAGTGAATGGTGAAAGGGGTGATAGACAATGTGAGTTCAATCCATCACTAAATCCAAGACCACATAGTGTCTCGATTTTGGAATTTGGTGCTGTTGGTGATGGTAAAACTTTGAACACTATTGCATTTCAGAATGCCATATTCTATCTCAAGTCATTTGCTGACAAAGGTGGTGCTCAGCTATATGTGCCCCCTGGAACATGGCTTACGCAAAGTTTCAATCTCACTAGCCATCTTACCCTCTTTTTGGAAAAAGGCGCTGTCATTATTGGATCTCAgGATCCTTCTCAATGGGACGTTATTGATCCTTTACCTTCTTATGGCCGAGGACTTGAAGTTCCCGGGGGAAGATATCAGAGCTTGATCAATGGATACATGTTACATGACGTGGTCATAACAGGTAATAATGGAACCATTGATGGCATGGGATTTACGTGGTGGGAATCATTTAAATCTCATTCCTTGAACTATAGCCGTCCTCATCTGGTTGAATTAGTGGCATCTAATGATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCATATAACATTCACCCAGTTTATTGCAGCAATGTACGTATTCATAATATTTCAATCTTTGCTCCTCCAGAATCCCCTTATACTGTTGGCATAGTACCAGATTCTTCTGATCATGTTTGCATAGAGGAATGTACCATTGCCACCGGTTATGATGCAATCGCCCTAAAAAGCGGCTGGGACGAGTATGGAATTGCCTATGGTAGGCCTACCGAGAATGTACACATCAGAAGGGTGCATCTACAAGCATCTTATGGCTCAAGTCTTGCATTCGGCAGTGACATGTCTGGCGGCATTTCAAATGTTGTCGTGGAGCATGTTAATCTCCACAACTCAAAAGGTGGCATTGAGTTCAGAACCGTCAGAGGAAGAGGTGGCTATATGAAAGAAATAATTATATCAGACGTAGAAATGAAGAATATCAACACAGCAATAGTTGCCACAGGTTATTGTGGTTCTCATCCTGATGATAAATTTGATCCTAATGCTTTACCACTTTTGGATCACTTTATTTTGCAAGATATAATTGGAACAAACATCACTATTGCTGGAAGCTTTGCTGGACTACAAGAATCTCCATTCACCAACATATGCTTATCCAATATAACATTGTCTGTAAATTATGCTTCCTCCACTACATGGAATTGCTCAAATGTCTCTGGAGTTTCAGATTCTGTTATCCCTAAACCATGTCCTGATCTTGATAGCCCTTCAAATTATTCCTCATCTTGTCTCTCCATGTTGAGTATGAAAGGGAAAACTGCAATATCCGGCATGGTGTCGATGAAATAG 1383 0.4085 MLVALFLMLLALNSEVRVNGERGDRQCEFNPSLNPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVIIGSQDPSQWDVIDPLPSYGRGLEVPGGRYQSLINGYMLHDVVITGNNGTIDGMGFTWWESFKSHSLNYSRPHLVELVASNDVVVSNLTFLNAPAYNIHPVYCSNVRIHNISIFAPPESPYTVGIVPDSSDHVCIEECTIATGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASYGSSLAFGSDMSGGISNVVVEHVNLHNSKGGIEFRTVRGRGGYMKEIIISDVEMKNINTAIVATGYCGSHPDDKFDPNALPLLDHFILQDIIGTNITIAGSFAGLQESPFTNICLSNITLSVNYASSTTWNCSNVSGVSDSVIPKPCPDLDSPSNYSSSCLSMLSMKGKTAISGMVSMK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04276 460 Gene3D - 27 423 IPR012334 -
Tsu04g04276 460 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 4 447 - -
Tsu04g04276 460 SMART pbh1 184 206 IPR006626 -
Tsu04g04276 460 SMART pbh1 207 233 IPR006626 -
Tsu04g04276 460 SMART pbh1 234 255 IPR006626 -
Tsu04g04276 460 SMART pbh1 296 317 IPR006626 -
Tsu04g04276 460 SMART pbh1 325 346 IPR006626 -
Tsu04g04276 460 SMART pbh1 268 290 IPR006626 -
Tsu04g04276 460 SUPERFAMILY Pectin lyase-like 34 431 IPR011050 -
Tsu04g04276 460 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Tsu04g04276 460 PANTHER PECTIN LYASE-RELATED 4 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04276 Tsu-Chr4 50908220 50911947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04276 1 431 Glycoside Hydrolase AT3G06770 63.678 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04276 - - gmx:100802343 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04276 04 50908220 50911947 Tsu04g04276 04 50908220 50911947 ECH
Tsu04g04276 04 50908220 50911947 Tsu08g00841 08 9143431 9148527 PCT