Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04274 ATGGGACAGGAATCAGATTCCAAATCCAAGTTGGTGATAGAAATTTGCTCCATTTCAACACGTTCGGCATCTTGTGTTCATAGGATTCTTTCAAATCCAACCAAAACAACTTTCATTGACTGGTACTGCATTCTTGGAGTGGAAGAAAATGCAGGTGTAAATCTCATTCGTAAGAGATACCATAAACTTGCATTGCAACTTCACCCAGATAAGAACAAACATCCAAAGGCTGAAATTGCCTTCAAACTTGTTTCTGAGGCAAATGCATGTCTAACTAATGTAGCAAAAAGAGAAGCTTTCGATTTCGAGAGGTACAAGCATTTCTGCATTGAGTGCAAAAGAATTCCATATACAGCATCAGGCAATGTTTCTGTCAAATCTGGTGGTTCAGGTTTCAAGGCATGGAATATTATCACGAAATCGCGATCTTTTAAGTTTTGGAGAAATATTAGGGATGTTAGAGAGAGATTTAATGAGGAGGCTAAGGTGGTTGAGAATTGTTTGAGAGTAAATTCAATGTCAAGGAAAGAATCACCACTTTACAATCCAGCTAGCTATCTACATAGGAGCAAGTCAATGCGTAGATTTGAGAAAGAAACGCCTGTTTTCAATCCGTCGGATTATTTGTACCAAGGTTATCCTCATATGAGAGGTTTCGGTAACAAGAATTCTTCCACATTTATGTACTTGCAGACAGCTAGTATTCTGCAGAATGATAAGCGAGGAGCACAGCATAGCTCGCCTGTTTTTGAGGTCAAAACACGGAGTATGTTTACAAACCAATTTGCTTTTGTACCATCAAGATACTAG 810 0.3864 MGQESDSKSKLVIEICSISTRSASCVHRILSNPTKTTFIDWYCILGVEENAGVNLIRKRYHKLALQLHPDKNKHPKAEIAFKLVSEANACLTNVAKREAFDFERYKHFCIECKRIPYTASGNVSVKSGGSGFKAWNIITKSRSFKFWRNIRDVRERFNEEAKVVENCLRVNSMSRKESPLYNPASYLHRSKSMRRFEKETPVFNPSDYLYQGYPHMRGFGNKNSSTFMYLQTASILQNDKRGAQHSSPVFEVKTRSMFTNQFAFVPSRY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04274 269 PANTHER BNAC03G44070D PROTEIN 4 256 - -
Tsu04g04274 269 SUPERFAMILY Chaperone J-domain 30 104 IPR036869 -
Tsu04g04274 269 Gene3D DnaJ domain 39 162 IPR036869 -
Tsu04g04274 269 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Tsu04g04274 269 SMART dnaj_3 39 96 IPR001623 -
Tsu04g04274 269 PRINTS DnaJ domain signature 60 75 IPR001623 -
Tsu04g04274 269 PRINTS DnaJ domain signature 76 96 IPR001623 -
Tsu04g04274 269 PRINTS DnaJ domain signature 113 132 IPR001623 -
Tsu04g04274 269 PRINTS DnaJ domain signature 42 60 IPR001623 -
Tsu04g04274 269 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 256 - -
Tsu04g04274 269 CDD DnaJ 40 87 IPR001623 -
Tsu04g04274 269 Pfam DnaJ domain 40 101 IPR001623 -
Tsu04g04274 269 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04274 Tsu-Chr4 50873212 50874571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04274 40 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 2.11e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04274 - - gmx:100801809 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04274 04 50873212 50874571 Tsu04g04274 04 50873212 50874571 ECH
Tsu04g04274 04 50873212 50874571 Tsu07g01799 07 17799460 17801148 PCT