Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04272 ATGCCAGAAGGATCACTCTTATCAAAACAAATTTCCTTAGTTCCATTGTATCATGATCATAAACAAGGTTATCAATTAGTGATAAAAGATGCATTTCTCAATAAAGTAAAACTTGTGTTTCAAGATAAGATGGAaatatattttgagtttttaCAAGTCATCAATGATCATAAGGCTCAAGGAATTGACATAAGAGGTGTAGTGGCAATAGTGAAAGAGTTGTTTAATGGgcttaaaaatttaattttgggatTCAATGCCTTCTTGCCAAAGGAATATAAAATCAAACTTCCATTTAAGCTTCATGGTCATAATAAGACTGGGAAAACAGAAGGGAAAAGAGTGAAGAAGGTAGCAGAGAACTGTGAACTTCCTTGGGATGTCCTTGATATCATTTCGAAAACTCTAGATATTGATGACCACTTCGAATTTGCTTGTGTGTGCAAGTATTGGAGGGCATTTCATAAAATGTATTGGAGATTGGCATTCCAAGAACCCCTAATTATTCATAAGTCTTCCTATGTTAAGAAATCTTATTCCTTTATCAGCATATCTAACCAAAAAGATTACCAATCAAAGATGATCAATTATTATTGGCACTTTGCTTATTCTGGATCTTCTAGCGGATACTTGATCATGACAGGGAACAATAATTCATTTATGCTAATCAATCCATttacaagaagaaaaaaggtaGTCATTACCTCAACCTTTAAagtaaatttttcttattttgccTACCATGTCTTACTCGCTTTTCAAAAAGGCTCCGATGAATTTGTTTTACTGGCTTTATGTAAACGTTCTAACAGTTTGCATGTCTATCAATCTCGAAATGTTGATTGGGTTACCTGTTCAAAAATGGGATATCCATGGACGATTGTTGACTTTGTTGTTTTGCATAACACTATATATGTTGTTACTGACAAGGGCAACATCGGGGTACTCAATTTAAATTCCGCAAATATAGAATTTCTAGAAATGCAGAGTATTCCTAGTGTAACTTCTTCGTCACGCATAAGGTTGGTTAGTTGTGATGAGCAACTTTTTGTGGTTCATACTCAACCCAGAGTAGTGTTTAATGTGTACAAAATCGACTTCTCAACTATGAATTATGTCAAATTGGAAAATTTAGGTGACATTGCATTATTTTATGCTCTGGGGGGAAACTATTATGCATTAAGCAACCGAAACATATGGGGTTATGAAAGCAACTCAGTATATGTCATCAATGATTTGACTACAAGATGCACAGTGTATTTAGGGGATGATCACAAACTGCCAGAATACATCGATTATGATAGACTTCAAACTCCTCCTCCTAATGAAAGACCATCCTTGTTGGACTGGGAAGGTTTGTGGGAGAAAGGAGCAAAATGTCAGGCTAGCCAAAACTTTACTCAAACATATTGGATAGATTACGAGGACGTCTTTGTTTTCCCTGATAGCCTAAAGTCTATTTGTCTCCCGCAAAGGCATCTCATTGTCGAGCATGCCTACAACTTAACATGTGCTGCAACAAAAGCAACAATTGCTGGTGCTCCGGTTGTTTGA 1554 0.3456 MPEGSLLSKQISLVPLYHDHKQGYQLVIKDAFLNKVKLVFQDKMEIYFEFLQVINDHKAQGIDIRGVVAIVKELFNGLKNLILGFNAFLPKEYKIKLPFKLHGHNKTGKTEGKRVKKVAENCELPWDVLDIISKTLDIDDHFEFACVCKYWRAFHKMYWRLAFQEPLIIHKSSYVKKSYSFISISNQKDYQSKMINYYWHFAYSGSSSGYLIMTGNNNSFMLINPFTRRKKVVITSTFKVNFSYFAYHVLLAFQKGSDEFVLLALCKRSNSLHVYQSRNVDWVTCSKMGYPWTIVDFVVLHNTIYVVTDKGNIGVLNLNSANIEFLEMQSIPSVTSSSRIRLVSCDEQLFVVHTQPRVVFNVYKIDFSTMNYVKLENLGDIALFYALGGNYYALSNRNIWGYESNSVYVINDLTTRCTVYLGDDHKLPEYIDYDRLQTPPPNERPSLLDWEGLWEKGAKCQASQNFTQTYWIDYEDVFVFPDSLKSICLPQRHLIVEHAYNLTCAATKATIAGAPVV 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04272 517 Gene3D Paired amphipathic helix 31 90 IPR036600 GO:0006355
Tsu04g04272 517 PANTHER OS06G0113600 PROTEIN 116 451 - -
Tsu04g04272 517 PANTHER OS06G0113600 PROTEIN 116 451 - -
Tsu04g04272 517 Pfam Paired amphipathic helix repeat 45 89 IPR003822 GO:0006355
Tsu04g04272 517 SUPERFAMILY PAH2 domain 31 91 IPR036600 GO:0006355
Tsu04g04272 517 SUPERFAMILY F-box domain 123 168 IPR036047 GO:0005515
Tsu04g04272 517 ProSiteProfiles PAH domain profile. 14 92 IPR003822 GO:0006355
Tsu04g04272 517 SUPERFAMILY Galactose oxidase, central domain 191 403 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04272 Tsu-Chr4 50855505 50858905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04272 32 97 WRKY Transcription Factor Family AT4G12020 50.000 8.79e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu04g04272 PAH 5.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04272 - - cam:101488742 580.096