Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04268 ATGAATTCCAATTATGGAAAACCCAATCCTCAAAAATCATCCTCTGTTTCTCTCAACAACTTCAATTTCGATCTTGATCTCGGAATCGGATCCAATCGATCCAAATCCCTAAAAGATCAGAAAAACCCCAATCCTTCCTATTCAACTCCTTCATATTCATCAGCGCAACCCAAAAAAACCACATGGACCCATCAACCCACTCAAACTCCGGCCGGATTACCCGGTGCACCGCCTTCGATGGTCGGTGACATCTTTGGAAAAAGTTGGGGATCTACTCAATCGTCTGGTCCTAGCATTGGAATTGTTaataaaaaccctaatttatttgGGGATTTGGTAACCTCTGCTTTGGGTcaaggttcttcttcttcttcaaatgtTCCTCTGAAAAATGCAACTCCAAAACCTAATAATTCCTCTTTTTCAATGTCAAATATGGCTGATTCTTTGCCTAAACCGGTTAATACACCACAGAGTGGTTCTACTTGGGGATCATCTTCTGggaattttaatttgaatgctAATAAAACTCCCAATCTTGGTGGTGGTCCTTCGATTCGAAGTGGCGTTGGTGTTGCTGCATCTGGTAGTGGAATTGGAATTGGAACTGGAACTGGAATTAGTTCTAGTAACAAAGATCCTTTTAGTTCATTGGCTGGTTTTGGATCAAATGGATCTAAGCAAAATTCTAGTCTTAATTCAGCTGCTAAACCTCAAAAGATTGATATAGAAGATGATGGTTTTGGAGATTTTCAAAATGCTTCAAAACCAAGCTCCAATGCATTTCCATCAAGTGGTGGTAGTTCtggaattgattttgattttattggATCGTCTGCTTCAAATAAGCCACCGGTTCAAGCTTCTTCGGGTGGTAGTGATCCAATGGATATGTTTTTCACGTCTTCAACTGCCTCGTctggaggtggtggtggtggtgcggCTGCGGCAGCGTCGTCTGAAATTGATGATTGGGGTACTGAATTTGGAAGTGGAAACCATGATGTGGGTGGAACAACTACTGAGCTTGATGGGCTTCCACCTCCTCCTGCTGGGATATCAGGTTCTGCTGCTAAAGGCAAAGGGATGGATAATTACAAACAAGGGCAATTTGCTGATGCTATTAAGTGGCTTTCATGGGCACTCATCATTTTAGAGAAAGCTGGTGATGATGCTGGCACGGAGGAGGTTTTGTCATGCAGAGCTTCCTGTTACAAAGAAGTTGGAGAGTATAAAAAAGCGGTGGCAGATTGTACTAAGGTTATTGGAAACGATGAAAAAAATGTATCTGTCCTCGTTCAGCGTGCTCTCTTGTACGAGAGTATGGAAAAGTACAAACTTGGTGCTGAAGACCTGAGAACTGTGCTGAAGATTGATCCTACTAATAGGGTTGCTAGAAGTACTGTTCACCGGTTGGCTAAGATGGCTGAATAG 1434 0.394 MNSNYGKPNPQKSSSVSLNNFNFDLDLGIGSNRSKSLKDQKNPNPSYSTPSYSSAQPKKTTWTHQPTQTPAGLPGAPPSMVGDIFGKSWGSTQSSGPSIGIVNKNPNLFGDLVTSALGQGSSSSSNVPLKNATPKPNNSSFSMSNMADSLPKPVNTPQSGSTWGSSSGNFNLNANKTPNLGGGPSIRSGVGVAASGSGIGIGTGTGISSSNKDPFSSLAGFGSNGSKQNSSLNSAAKPQKIDIEDDGFGDFQNASKPSSNAFPSSGGSSGIDFDFIGSSASNKPPVQASSGGSDPMDMFFTSSTASSGGGGGGAAAAASSEIDDWGTEFGSGNHDVGGTTTELDGLPPPPAGISGSAAKGKGMDNYKQGQFADAIKWLSWALIILEKAGDDAGTEEVLSCRASCYKEVGEYKKAVADCTKVIGNDEKNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPTNRVARSTVHRLAKMAE 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04268 477 PANTHER OS03G0340700 PROTEIN 1 477 - -
Tsu04g04268 477 SUPERFAMILY TPR-like 357 467 IPR011990 GO:0005515
Tsu04g04268 477 Gene3D Tetratricopeptide repeat domain 355 476 IPR011990 GO:0005515
Tsu04g04268 477 MobiDBLite consensus disorder prediction 218 237 - -
Tsu04g04268 477 SMART tpr_5 355 388 IPR019734 GO:0005515
Tsu04g04268 477 SMART tpr_5 395 428 IPR019734 GO:0005515
Tsu04g04268 477 SMART tpr_5 429 462 IPR019734 GO:0005515
Tsu04g04268 477 MobiDBLite consensus disorder prediction 29 70 - -
Tsu04g04268 477 MobiDBLite consensus disorder prediction 252 305 - -
Tsu04g04268 477 ProSiteProfiles TPR repeat profile. 429 462 IPR019734 GO:0005515
Tsu04g04268 477 MobiDBLite consensus disorder prediction 29 98 - -
Tsu04g04268 477 Pfam Tetratricopeptide repeat 430 462 IPR019734 GO:0005515
Tsu04g04268 477 MobiDBLite consensus disorder prediction 119 166 - -
Tsu04g04268 477 MobiDBLite consensus disorder prediction 243 305 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04268 370 477 Calmodulin-binding Proteins AT3G25230 30.357 2.34e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04268 - - vun:114178472 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04268 04 50835838 50839671 Tsu04g04268 04 50835838 50839671 ECH